Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g55 ATGGATGATGGTGGGCAGCGGGAAAATGGGAGACATAAACTGGATTATTATAAAGGACCACAGAATCCGTGGAATATGATGCCCCAGCATCATTTGAAGGAACAAAATGCCTTGACAATGAATAAGAAGGTTGTGAACATTCTTGCTGAGAGGGATAATGCTATTCGAGAGCGGAATATAGCCCTATCTGAAAAGAAGGCAGCCTTGGAAGAGCGGGATGAGGCACTAATGCAACGAGATGCTGCAATCTCTGAGCGTGATAATGCCCTTCTGGAACGTGACAATGCTATTGCTGCCCTTCGATATCGAGAAAGTTCGCGCAAGCGAACAAAGGAGAACAAGGCGGGAAAGAAAGTAAATGAGGATTTGAACAGGCAGGTCATTTCTGATGGGTTGAAGATAAAGTCTGAGTGGGACAGTCAGGATCTGGGCTTGAATCTAGTCACTTTTGATGAATCCACCATGCCAGTGCCAGTCTGCTCATGCACTGGTGTCCCTCGACAGTGCTACAAATGGGGAAACGGAGGATGGCAATCATCTTGTTGCACGACCACCCTGTCGTCATACCCACTACCACAAATGCCCAACAAGCGCCATGCACGAATGGGTGGCAGGAAGATGAGTGGAAGTGTCTTTACAAGATTGCTCAGCCGACTGGCAGCAGAAGGTCATGATCTCTCAATGCCTCTGGATCTCAAGGACTACTGGGCCAAGCATGGGACAAATCGCTACATCATCATCAAGTAG 747 47.79 MDDGGQRENGRHKLDYYKGPQNPWNMMPQHHLKEQNALTMNKKVVNILAERDNAIRERNIALSEKKAALEERDEALMQRDAAISERDNALLERDNAIAALRYRESSRKRTKENKAGKKVNEDLNRQVISDGLKIKSEWDSQDLGLNLVTFDESTMPVPVCSCTGVPRQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARMGGRKMSGSVFTRLLSRLAAEGHDLSMPLDLKDYWAKHGTNRYIIIK* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 679189 684422 + Vvi3g55 Vvi3g55 783730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g55 248 PANTHER PROTEIN BASIC PENTACYSTEINE4 110 248 - -
Vvi3g55 248 PANTHER PROTEIN BASIC PENTACYSTEINE4 1 108 - -
Vvi3g55 248 PANTHER - 110 248 IPR010409 -
Vvi3g55 248 PANTHER - 1 108 IPR010409 -
Vvi3g55 248 MobiDBLite consensus disorder prediction 1 15 - -
Vvi3g55 248 Pfam GAGA binding protein-like family 106 248 IPR010409 -
Vvi3g55 248 Pfam GAGA binding protein-like family 1 103 IPR010409 -
Vvi3g55 248 MobiDBLite consensus disorder prediction 1 21 - -
Vvi3g55 248 SMART GAGA_bind_2 1 248 IPR010409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g55 - - - vvi:100233069 480.33
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g55 Vvi18g1061 ECH
Vvi3g55 Vvi18g1060 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g55 . . . . . Bpe12g00098 . . Cmo19g00710 . . . . . Sed11g1487 Cpe04g00095 Cpe15g00568 Bhi05g01776 Tan02g2047 Cmetu03g1142 . . . . Cla02g00476 Cam02g0483 Cec02g0485 Cco02g0490 Clacu02g0486 Cmu02g0481 Cre02g0816 Cone12ag1196 Cone8ag1244 . . . Csa07g00049 . Cme01g01320 . Blo13g00531 Bda15g01061 . . . . Bma08g00777 . . . . Cma19g00701 . Car19g00543 . . . . . . . . . . . . . . . . Lsi11g01148 . Chy01g00732 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi1g554 . 15 274 BBR/BPC Transcription factor family AT2G01930 55.6 5.1e-81 298.1
Vvi1g554 . 141 274 BBR/BPC Transcription factor family AT2G35550 59.0 1.3e-42 170.2
Vvi18g1061 ECH 32 147 BBR/BPC Transcription factor family AT2G35550 59.5 7.3e-38 154.5
Vvi3g55 ECH 135 249 BBR/BPC Transcription factor family AT2G35550 57.4 2.8e-37 152.5
Vvi1g554 . 15 274 BBR/BPC Transcription factor family AT1G68120 51.1 9.1e-72 267.3
Vvi18g1061 ECH 40 147 BBR/BPC Transcription factor family AT1G68120 57.4 9.6e-37 151.0
Vvi3g55 ECH 1 249 BBR/BPC Transcription factor family AT2G21240 65.3 2.9e-79 292.4
Vvi18g1061 ECH 5 147 BBR/BPC Transcription factor family AT2G21240 70.6 2.2e-58 223.0
Vvi3g55 ECH 1 249 BBR/BPC Transcription factor family AT4G38910 64.1 2.8e-71 265.8
Vvi18g1061 ECH 6 147 BBR/BPC Transcription factor family AT4G38910 68.3 2.6e-53 206.1
Vvi18g1061 ECH 2 147 BBR/BPC Transcription factor family AT5G42520 74.2 4.0e-62 235.3
Vvi3g55 ECH 135 249 BBR/BPC Transcription factor family AT5G42520 80.3 6.5e-52 201.4
Vvi1g554 . 141 274 BBR/BPC Transcription factor family AT2G35550 59.0 1.3e-42 170.2
Vvi18g1061 ECH 32 147 BBR/BPC Transcription factor family AT2G35550 59.5 7.3e-38 154.5
Vvi3g55 ECH 135 249 BBR/BPC Transcription factor family AT2G35550 57.4 2.8e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006274 1 3 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14667 PF06217 GAGA_bind 3.00E-79 No_clan Vvi TF