Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g555 ATGATTAAGCTATTTAAAGTGAAGGAAAAGCAGAGGGAAATTGCGGAAAATGCCAATGGAAAAGCACCTGTCAAGAAGCAGAGTGCGGGAGAATTACGACTTCATAAAGATATCAGTGAACTGAATCTACCCAAAACTTGTTGCATATCATTTCCCAATGGCAAGGATGACCTGATGAGCTTTGAGGTTACCATTCGGCCTGATGAAGGATACTATTTAGGTGGTACATTCGTGTTCTCTTTCCAAGTTTCTCCCATCTATCCTCACGAGGCACCAAAAGTCAAGTGCAAGACAAAGGTCTACCATCCTAACATTGACTTGGAAGGAAACGTCTGCCTCAACATCCTAAGAGAGGACTGGAAACCTGTTCTTAATATAAACACTATAATTTATGGATTGTTTCATCTTTTCACGCAACCCAATTACGAAGATCCGCTCAATCATGATGCTGCTGCTGTGTTGAGGGATAACCCAAAGATGTTTGAATCGAATGTGAGAAGGGCGATGGCTGGTGGGTATGTGGGGCAGACCTTCTTCCCACGGTGCATGTAG 552 43.12 MIKLFKVKEKQREIAENANGKAPVKKQSAGELRLHKDISELNLPKTCCISFPNGKDDLMSFEVTIRPDEGYYLGGTFVFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHDAAAVLRDNPKMFESNVRRAMAGGYVGQTFFPRCM* 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5404937 5409770 + Vvi3g555 Vvi3g555 784230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g555 183 CDD UBCc 33 167 IPR000608 -
Vvi3g555 183 Gene3D Ubiquitin Conjugating Enzyme 25 183 IPR016135 -
Vvi3g555 183 SUPERFAMILY UBC-like 20 181 IPR016135 -
Vvi3g555 183 PANTHER - 10 173 - -
Vvi3g555 183 Pfam Ubiquitin-conjugating enzyme 33 168 IPR000608 -
Vvi3g555 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 101 116 IPR023313 -
Vvi3g555 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 29 174 IPR000608 -
Vvi3g555 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 10 173 - -
Vvi3g555 183 SMART ubc_7 32 174 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g555 K10579 UBE2M, UBC12; ubiquitin-conjugating enzyme E2 M [EC:2.3.2.34] - vvi:100255479 384.03
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g555 Vvi18g897 ECH
Vvi3g555 Vvi4g922 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g555 . . . . . . . . Cmo19g00660 Cmo11g01317 . . . . . Cpe04g00246 Cpe15g00523 Bhi05g01195 . . . . . . Cla02g00546 Cam02g0569 Cec02g0572 Cco02g0583 Clacu02g0570 Cmu02g0566 Cre02g0897 Cone12ag1136 Cone8ag1183 Cone3ag1141 Cone10ag1152 . . . Cme01g01472 . . . . . . . . . . . Cma11g01736 Cma19g00649 Car11g01061 Car19g00493 . . . . . . . . . . . . . . . . Lsi11g01069 . Chy01g00823 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001287 3 4 1 2 2 2 4 2 2 2 2 2 4 1 2 3 2 4 4 2 2 2 2 2 2 1 2 4 6 3 76