Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g556 ATGGGTAAAGGAGGGGGCTGTGTCCTAAGCAAGAAGAGAATGCCACCGTCCGTATCCGACGATCCTCCCAACGAGGACACGGATATCCCTGTTCCGCTTCTGGACACCGCTATTCCAGAAGCTGGTGACCTCAATTCGCCTTCGAAATTGAGAATCTTCATCGTTTTCTATTCCATGTACGGACACGTGGAGATTTTGGCGAGGAGAATTAAGTCGGGAGTGGACAGCGTTGACGGGGTTGAAGGGGTTCTTTTCCGGATCCCGGAAACGATGCCGCCTGAGGTTTTGGAGCAGATGAAGGTGCCGCAGAAGGCCGACGACGTGCCGGTGATGTCCGAGGCCGCGGAGCTGGTGGAGGCTGACGGACTGCTGTTTGGTTTTCCGACCAGATACGGCTCTATGGCGGCGCAGATGAAGGCGTTTTTCGATTCCACGGGGCAGCTGTGGAGGGAGCAGAAGCTCGCCGGCGTGCCCGCCGGATTCTTCGTGAGCACCGGAACACAGGGTGGCGGCCAAGAGACTACAGCTTGGACAGCAATCACCCAGTTAGCTCACCATGGGATGCTCTATGTTCCCATTGGGTACACATTTGGAGCTGGGATGTTCAAGATGGACTCCATTAGAGGGGGGTCTCCATATGGTGCAGGTGTTTTTTCAGGAGATGGGACAAGGGAACCAAGTGAGACAGAGCTAGCACTTGCAGAGCATCAAGGCAAGTACATGGCTGCAATAGTCAAGAGGTTTGGCCGGCCTCGAACCCTCGAACCCTAA 771 55.38 MGKGGGCVLSKKRMPPSVSDDPPNEDTDIPVPLLDTAIPEAGDLNSPSKLRIFIVFYSMYGHVEILARRIKSGVDSVDGVEGVLFRIPETMPPEVLEQMKVPQKADDVPVMSEAAELVEADGLLFGFPTRYGSMAAQMKAFFDSTGQLWREQKLAGVPAGFFVSTGTQGGGQETTAWTAITQLAHHGMLYVPIGYTFGAGMFKMDSIRGGSPYGAGVFSGDGTREPSETELALAEHQGKYMAAIVKRFGRPRTLEP* 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5411011 5414145 - Vvi3g556 Vvi3g556 784231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g556 256 Pfam NADPH-dependent FMN reductase 65 193 IPR005025 GO:0016491
Vvi3g556 256 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 51 247 IPR010089 GO:0003955|GO:0010181
Vvi3g556 256 SUPERFAMILY Flavoproteins 51 248 IPR029039 -
Vvi3g556 256 ProSiteProfiles Flavodoxin-like domain profile. 52 241 IPR008254 GO:0010181
Vvi3g556 256 PANTHER NAD(P)H DEHYDROGENASE (QUINONE) FQR1-LIKE 2-RELATED 5 253 - -
Vvi3g556 256 Gene3D - 49 249 IPR029039 -
Vvi3g556 256 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 5 253 - -
Vvi3g556 256 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g556 K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] - vvi:100257247 506.523
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g556 Vvi4g926 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g556 . Blo15g00688 Bda06g00948 . Bpe07g00459 . . Bma12g00546 . . Cma02g00425 . Car02g00281 . . . . . . . . . . . . . . . . . . . . Cone3ag1142 . Lsi10g00335 . Chy11g00416 . . . . . . . . . . Cmo02g00426 . . . . . . Cpe05g01236 . . . . . . . Cla09g01743 Cam09g1834 Cec09g1895 Cco09g1987 . . Cre01g0676 . Csa02g01222 . Cme11g00475
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 29