Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g563 ATGAGGTCAATCAAAGATGGGTTTCGATTTCACGCCCACGCCATAAAAAACGGCATCACATCCACCGTCTTCACATCAAATCAACTCATTCATCTGTACTCCAAACACGGTTTTTTGGCAGAAGCCCATAAGTTGTTCGATGAAATGCCTGAGCGAAATGTTTTCACTTGGAATGCCATAATTTGGGCTTATATAAAAACCCAGAACTTGAAACAAGCGCGGGAGCTATTTGACTCTGCTCCAAGCAAAGATTTGGTGACTTACAATTCAATGTTATCGGGTTATATAAACACTGATGGATATGAGACTAATGCGCTTAAATTATTCATTGAAATGCAATCATTGAATGATGAAACTCGAATTGATGAGTTTTCTTTGACGAGGATGCTTAACTTGTCCGCAAAGTTATCCATGGAGTCTTATGGGAAGCAACTGCACTCATATATGGTGAAAACTGCAAACAATATAAGTGGGTTTGCTGTGAGCTCTCTTATTGACATGTATTCCAAGTGTGGGTGTTTCCGTGAAGTATGCCAAGTGTTTGATGGATGTGCTGGGGTGCTTGATTTGGTTTCAAAGAATGCAATGGTGGCAGCTTGTTGCAGAGAAGGTGAGTTGGAAATGGGCGTGAATTTATTTTGGAGAGACCTGGAGTTGAATGATGTGGTGTCTTGGAACACATTGATTTCAGGGTATGTTCAGAATGGTTGTGAGGAGGATGCACTGAAGTTGTTTGTTCATATGGAGGAGAATGAAGTGAGATGGAATGAGCACACTATCGCGGGTCTTTTGAGTGCTTGTGCTGGTTTAAGGAGTTTGAAGCTTGGGAAGGAAGTGCATGGTTGGGTTTTGAAATATGAGTTGGGTTTCAACCCATTCATAAGCAGTGGCCTTGTTGATGTCTATTGCAAGTGTGGTAATATGAAGTATGCAGAGTTAGTTTATGCGACAATTGGGACTGGGAATGCCTTTTCTATCACTTCAATGATTGTGGGGCATTCCTCTCAAGGCAACATGGGAGAAGCTCGGAGGCTTTTTGATTCTTTAACTGAGAAGAGTTCTATCATCTGGACAGCTTTGTTTACTGGGTATGTCAAATCACAGCAATGTGAAGCTGTGTTTGAACTTTTGAGTGAGTTCAGAGTGAAGGAAGCAATGGTTCCAGATGCTTTGATCCTCATCAGTGTACTGGGTGCATGTGCAATACAAGCTGCTCTTAATCCTGGAAAGCAGATTCATGCTTATGTTCTAAGAATTGGGATTGAACTAGATGAGAAGTTGGTCAGTGCTATGGTTGATATGTATTCAAAATCTGGGAATATAAAATATGCAGAAAAGATCTTCCAAAGAGTTACTAACAGAGATGCAGTCATTTACAATATAATGACAGCTGGGTATGCACACCATGGGCATGAGAATCAAGCTATCCAGCAATTTGAGGAAATGTTGGAGAGAGGTGTTAGACCTGATGCAGTCACCTTTGTTGCACTTCTATCAGCTTGCCGCCATTGTGGTTTAGTAGAACTAGGGGAGAAGTATTTTGCTTCCATGACAGATTACAATATATTGCCTGAAATTGATCACTATGCATGTATGATTGATTTGTATGGGAGGGCTAACCAACTAGAGAAGGCACAAGAGAGGCAGAAGAGAAGATATTGA 1662 41.03 MRSIKDGFRFHAHAIKNGITSTVFTSNQLIHLYSKHGFLAEAHKLFDEMPERNVFTWNAIIWAYIKTQNLKQARELFDSAPSKDLVTYNSMLSGYINTDGYETNALKLFIEMQSLNDETRIDEFSLTRMLNLSAKLSMESYGKQLHSYMVKTANNISGFAVSSLIDMYSKCGCFREVCQVFDGCAGVLDLVSKNAMVAACCREGELEMGVNLFWRDLELNDVVSWNTLISGYVQNGCEEDALKLFVHMEENEVRWNEHTIAGLLSACAGLRSLKLGKEVHGWVLKYELGFNPFISSGLVDVYCKCGNMKYAELVYATIGTGNAFSITSMIVGHSSQGNMGEARRLFDSLTEKSSIIWTALFTGYVKSQQCEAVFELLSEFRVKEAMVPDALILISVLGACAIQAALNPGKQIHAYVLRIGIELDEKLVSAMVDMYSKSGNIKYAEKIFQRVTNRDAVIYNIMTAGYAHHGHENQAIQQFEEMLERGVRPDAVTFVALLSACRHCGLVELGEKYFASMTDYNILPEIDHYACMIDLYGRANQLEKAQERQKRRY* 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5462189 5464132 - Vvi3g563 Vvi3g563 784238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g563 553 Gene3D Tetratricopeptide repeat domain 1 115 IPR011990 GO:0005515
Vvi3g563 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Vvi3g563 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Vvi3g563 553 TIGRFAM PPR: pentatricopeptide repeat domain 457 491 IPR002885 -
Vvi3g563 553 TIGRFAM PPR: pentatricopeptide repeat domain 223 256 IPR002885 -
Vvi3g563 553 TIGRFAM PPR: pentatricopeptide repeat domain 27 53 IPR002885 -
Vvi3g563 553 Pfam PPR repeat 192 213 IPR002885 -
Vvi3g563 553 Pfam PPR repeat 86 115 IPR002885 -
Vvi3g563 553 Pfam PPR repeat 55 79 IPR002885 -
Vvi3g563 553 Pfam PPR repeat 356 381 IPR002885 -
Vvi3g563 553 Pfam PPR repeat 429 451 IPR002885 -
Vvi3g563 553 Pfam PPR repeat 25 54 IPR002885 -
Vvi3g563 553 Pfam PPR repeat 161 182 IPR002885 -
Vvi3g563 553 Pfam PPR repeat 327 352 IPR002885 -
Vvi3g563 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 119 IPR002885 -
Vvi3g563 553 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 390 547 - -
Vvi3g563 553 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 29 396 - -
Vvi3g563 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Vvi3g563 553 Gene3D Tetratricopeptide repeat domain 276 412 IPR011990 GO:0005515
Vvi3g563 553 Gene3D Tetratricopeptide repeat domain 500 549 IPR011990 GO:0005515
Vvi3g563 553 Gene3D Tetratricopeptide repeat domain 413 499 IPR011990 GO:0005515
Vvi3g563 553 Gene3D Tetratricopeptide repeat domain 137 275 IPR011990 GO:0005515
Vvi3g563 553 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 29 396 - -
Vvi3g563 553 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 390 547 - -
Vvi3g563 553 Pfam PPR repeat family 455 501 IPR002885 -
Vvi3g563 553 Pfam PPR repeat family 221 268 IPR002885 -
Vvi3g563 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g563 - - - vvi:109121399 1099.73
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g563 . . . . . . . . Cmo19g00661 . . . . . . . Cpe15g00525 Bhi05g01201 . . . . . . Cla02g00543 . . . . . . . . . . . Csa07g00783 . Cme01g01469 . . . Bda14g00541 . . . . . . Cmo16g00372 . Cma19g00651 . Car19g00495 . . . . . . . . . . . . . . . . Lsi11g01072 . Chy01g00820 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013461 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 26