Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g569 ATGGTAGCTTCAGCTATATCAACGACCTTGAGTTCCTCTATTGTTTCTCGCAACACTTCCTCGTCCATTTCATTTTTTTCTCCCAGATACTCAACAAAACCAATTGTTTCTGCTTTGTCCAAATCTTCAAGTATTGGATTATCTAGCAAAACTTCTGGGTTAAGTCTAAAGGTTGATGAACGGGGTCGCCATGCTGGTAATCCGAGTTATGGTGCAATAGAAGCCAAAAAGGGGAACCCACCCGTAGCGCCATCTGTGATGACTCCTGGAGGACCTTTGGACCTATCAACTGTTCTATTCAGGAGTCGAATTATTTTCATCGGGCAGCCAATCAATTCAATGGTGGCTCAGCGAGTTATCTCACAGCTTGTGACTCTCGCAGCTATTGATGAGGATGCAGATATTCTGATGTATCTCAACTGCCCTGGTGGAAGCACCTATTCTGTATTGGCCATCTATGATTGCATGGCTTGGATAAAGCCTAAGGTTGGAACAGTATGTTTTGGCGTAGCTGCAAGTCAAGGAGCACTTCTTCTTGCTGGTGGGGAAAAGGGAATGCGTTATGCAATGCCAAATGCACGTATTATGGTACACCAACCGCAGGGTGGATGTGGGGGCCACGTGGAGGATGTAAGGCGCCAAGTGAATGAAGCAGTTCAATCTCGCCATAAAATTGACAAGATGTATGCTGCTTTTACTGGCCAACCTCTCGAGCAAGTGCAACAATACACTGAGAGGGATCGTTTCTTATCTGCTTCTGAGGCCATGGAGTTTGGCTTCATCGACGGTATCCTAGAAACCGAGTACTAA 810 45.68 MVASAISTTLSSSIVSRNTSSSISFFSPRYSTKPIVSALSKSSSIGLSSKTSGLSLKVDERGRHAGNPSYGAIEAKKGNPPVAPSVMTPGGPLDLSTVLFRSRIIFIGQPINSMVAQRVISQLVTLAAIDEDADILMYLNCPGGSTYSVLAIYDCMAWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMVHQPQGGCGGHVEDVRRQVNEAVQSRHKIDKMYAAFTGQPLEQVQQYTERDRFLSASEAMEFGFIDGILETEY* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5554222 5560456 - Vvi3g569 Vvi3g569 784244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g569 269 Pfam Clp protease 94 267 IPR023562 -
Vvi3g569 269 ProSitePatterns Endopeptidase Clp histidine active site. 187 200 IPR033135 -
Vvi3g569 269 PRINTS Clp protease catalytic subunit P signature 94 109 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g569 269 PRINTS Clp protease catalytic subunit P signature 134 154 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g569 269 PRINTS Clp protease catalytic subunit P signature 165 182 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g569 269 PRINTS Clp protease catalytic subunit P signature 186 205 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g569 269 PRINTS Clp protease catalytic subunit P signature 243 262 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g569 269 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 15 269 IPR023562 -
Vvi3g569 269 Gene3D - 74 269 - -
Vvi3g569 269 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC 15 269 - -
Vvi3g569 269 CDD S14_ClpP_2 94 264 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g569 269 SUPERFAMILY ClpP/crotonase 93 267 IPR029045 -
Vvi3g569 269 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 78 268 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g569 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - vvi:100852857 477.248
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g569 . . . Bda08g00901 . . Bma05g00475 . . . Cma02g00409 . Car02g00268 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00353 . Chy11g00395 . . . . . . . . . . Cmo02g00413 . . . . . . Cpe05g01249 Bhi10g02028 Tan05g1325 Cmetu11g1874 . Hepe08g1028 . . . . . . . . . . Csa02g01243 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011349 2 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 31