Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g57 ATGAGGGTCGGTGAGAATCTTCCTCCTCGGAAGGCACATAGGCGGTCCAGTAGTGATATCCCCTTTGGGTTTTCTTCGATTATGCAATCTTCTCCGCCTCTTATTCCATTAAGGGGTTCAGGTGCTTTGGAGCGCAATGCAGAGGGGATGGGTGAGAGGAAATCAGAAGGTGAAGTTGTTGACGATTTGCTCTCGGCATATATGAATTTGGACAACATTGATGCGTTGAACTCTCCCGGTACTGAGGAGAAAAATGGTACTGAGAATCGCGAGGATTTGGATAGCAGAGCTAGTGGGACAAAGACGAATGGGGGTGATAGCAGTGACAATGAAGCAGAAAGCAGTAGGGAAGGAGTCAAAAGAAGTGCAGGTGGTGACATTGCTCCAACCACCCGACATTATAGAAGTGTTTCTATGGATAGTTTTATGGGGAAGATGAACTTCGGTGATGAGTCGCCAAAATTGCTGCCATCGCCAGGAACCCGTCCTGGACAACTATCACCAAGTAATTCAATGGATGGGAATTCAGCGACCTTTAGCTTGGAATTTGGCAATGGAGAATTTAGTGGGGCTGAACTGAAAAAGATTATGGCGAATGAGAAACTTGCTGAGATTGCATTAACTGATCCCAAGCGTGCCAAAAGGATTTTGGCCAATCGTCAATCAGCTGCTCGCTCTAAAGAACGGAAGATGCGTTATATATCAGAATTGGAGCACAAGGTCCAGACATTACAGACAGAAGCTACTACATTGTCTGCCCAGCTAACTTTGTTACAGAGAGATTCTGCTGGACTCACAAGCCAGAACAATGAGTTGAAGTTCCGCCTTCAAGCCATGGAACAACAGGCACAACTTCGAGATGCTCTTAATGAAGCGTTAACTGCGGAGGTCCAGCGATTGAAATTAGCGACTGCAGAGTTGGGTGGGGAATCTCAGGCCTCTAAGTGCCTCGTCCCACAGCTTTCCGTCAACCCCCAAATGTTCCATCTCCACCACCAGCAGCCTACCCAACTCAACATTCACCAGTTGCAGCAACAACAGCAGCAACAACACAATCAGCAGCAGCAGCAGAATGGCAGCACAACCACAAAGCATGAATCAAACCAATAG 1110 47.21 MRVGENLPPRKAHRRSSSDIPFGFSSIMQSSPPLIPLRGSGALERNAEGMGERKSEGEVVDDLLSAYMNLDNIDALNSPGTEEKNGTENREDLDSRASGTKTNGGDSSDNEAESSREGVKRSAGGDIAPTTRHYRSVSMDSFMGKMNFGDESPKLLPSPGTRPGQLSPSNSMDGNSATFSLEFGNGEFSGAELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTSQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATAELGGESQASKCLVPQLSVNPQMFHLHHQQPTQLNIHQLQQQQQQQHNQQQQQNGSTTTKHESNQ* 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 690084 693321 + Vvi3g57 Vvi3g57 783732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g57 369 SUPERFAMILY Leucine zipper domain 211 262 IPR046347 GO:0003700|GO:0006355
Vvi3g57 369 Coils Coil 227 282 - -
Vvi3g57 369 MobiDBLite consensus disorder prediction 1 57 - -
Vvi3g57 369 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 5 369 - -
Vvi3g57 369 MobiDBLite consensus disorder prediction 162 177 - -
Vvi3g57 369 Gene3D - 210 262 - -
Vvi3g57 369 CDD bZIP_plant_RF2 212 263 IPR044759 GO:0003700|GO:0006355
Vvi3g57 369 MobiDBLite consensus disorder prediction 145 177 - -
Vvi3g57 369 MobiDBLite consensus disorder prediction 73 132 - -
Vvi3g57 369 MobiDBLite consensus disorder prediction 19 33 - -
Vvi3g57 369 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN 5 369 - -
Vvi3g57 369 MobiDBLite consensus disorder prediction 339 369 - -
Vvi3g57 369 MobiDBLite consensus disorder prediction 1 17 - -
Vvi3g57 369 Pfam bZIP transcription factor 211 269 IPR004827 GO:0003700|GO:0006355
Vvi3g57 369 SMART brlzneu 207 271 IPR004827 GO:0003700|GO:0006355
Vvi3g57 369 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 209 272 IPR004827 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g57 Vvi18g1062 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14669 PF00170 bZIP_1 3.40E-10 CL0018 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g57 - - vvi:100255631 628.632