Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g570 ATGGACGAAATTTGGGAGAGAGCCGTTGAAACGGCGATCGACGGCAAAACTGATGCATCTCCGGTCCGGTCGCTAACCCTGGACGGCGCTGTGAAATGCTACAGTGGCGGTCTACCACCGCCGACACTTCTCGAGAAATTCCAAAATCTCGAACACCTATCAATCGCCAACGTCGGGTTGTCGTCGCTCGAGAAATTCCCGAGACTTGGAAATCTCCAGCGACTGATTCTCTCCGACAACAGAATCTCCGGTGGCCTCGAATTCCTCGTTGAAGCGAATCTCCAGTCGCTTCGGGACTTGGATTTGTCGAACAATCGGATTCAGTACTTCGAGGACTTGGCTCCTCTGGCTCGGCTCAAGCTAGTTTCGCTGGACTTGTATGAGTGTCCTGTGACGAAGATTAAGGATTATAGGGCTAGGGTTTTTGGATTGATTGAGACGTTGAAGTACTTGGACAAGCTAGATTTTGACGAGAATGAAGAGGACGATGAAGATGAAGACGAGGAAGATGATGGTGAAGAGGATGATGATGGTGATGAAGAAGTGGAAGATGAAGAGGAGGATGTGAGGCCCGGGATTGAAGGCCGGGGAATCGGTAATGGTGGGGAAATTGATGGGCATGAGCAAGGTGAGGAGGACAGTGATGATGACGGTGAGTATGAGGAAGAAGACGGTGAGGACGAGGAAGAAGCTTTCCATATCCGCCCAGTTAGGCGTGCAGAAGAAGATGGTGAAGCAAGTGATGTGGACCCTGAAAATGAAGTAGATGATGTTGTTGAAGTGGAGGAAGAGGTTGAAGATGCGGTGCAACTACCCAGAGAAGCTCAGCTACCCTCTTCTTCCCAGTCCCGTCTCAAGAGGAAGAGAGATGAAGAAAATGACGGTGCCGACATCAGCGATGATGAAAGCGTTGAGGATGTCTCATTGAAGCCTCATTAA 939 49.95 MDEIWERAVETAIDGKTDASPVRSLTLDGAVKCYSGGLPPPTLLEKFQNLEHLSIANVGLSSLEKFPRLGNLQRLILSDNRISGGLEFLVEANLQSLRDLDLSNNRIQYFEDLAPLARLKLVSLDLYECPVTKIKDYRARVFGLIETLKYLDKLDFDENEEDDEDEDEEDDGEEDDDGDEEVEDEEEDVRPGIEGRGIGNGGEIDGHEQGEEDSDDDGEYEEEDGEDEEEAFHIRPVRRAEEDGEASDVDPENEVDDVVEVEEEVEDAVQLPREAQLPSSSQSRLKRKRDEENDGADISDDESVEDVSLKPH* 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5563522 5567438 + Vvi3g570 Vvi3g570 784245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g570 312 PANTHER ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32-RELATED PROTEIN 2 2 296 - -
Vvi3g570 312 SUPERFAMILY L domain-like 41 158 - -
Vvi3g570 312 MobiDBLite consensus disorder prediction 155 312 - -
Vvi3g570 312 MobiDBLite consensus disorder prediction 156 188 - -
Vvi3g570 312 MobiDBLite consensus disorder prediction 246 267 - -
Vvi3g570 312 PANTHER ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 2 296 IPR045081 -
Vvi3g570 312 MobiDBLite consensus disorder prediction 230 245 - -
Vvi3g570 312 MobiDBLite consensus disorder prediction 208 229 - -
Vvi3g570 312 Pfam Leucine-rich repeat 56 156 - -
Vvi3g570 312 Gene3D Ribonuclease Inhibitor 5 169 IPR032675 -
Vvi3g570 312 ProSiteProfiles Leucine-rich repeat profile. 96 117 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g570 - - - vri:117911476 309.686
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g570 Vvi4g950 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g570 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015391 2 0 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 12