Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g579 ATGGAGGAGAAGCGTCGAGAGGCCGGAAGTCTGCCGCCGGCGAGCTCTTCTGCTGGGACGCGCCTCGCCCGCGAGAAAGCTTTAGCTCCTCCTCTCGCTTCGATCCACAATGGTCCTTGCACCAGAGCTCGCCAATCTCCAAACAACGTTTCATCGGCTGCTGCTGCCACTGCCGCGGCGTCTGGTGCCTTGCAGAAGTTGGATCAGCCGGAAGCGGCTCCAGGGGCTTCATCCAGTGGAGCTGGGCTGACTGCAGAAGAATTGAATGTGAAAAATGAAGATTGGGAGGCCTTGGAGGCTGAGATGGCCGCTGAGTTTGAAGCTATAAGGTCTCGTGATGCTAATGTTCATGTGGTTCCGAGCTCATCAGGCGAAATTCATTTGTTTACAACTCTCTCTACAGGTTGGTTTTCATGGACAAAAGTTCACCCTCTTGAGGCGCAGGCAATGCCTTCATTCTTCAATGGAAAGTCTGAGAACCGGAATCCTGATATGTACAAACAAATACGTGACTGGATTATAAAGAGATTTCATGGAAATCCAAACACGCAAATTGAAGTAAAAGATCTGTCAGAACTCGAAATTGGAGACCTGGATGCAAGACAAGAGGTGATGGAGTTTCTGGATTACTGGGGCTTGATTAATTTCCATCCATTCCTACCTGCGGAATCTAGTGTGGCAAATGGTGATGATGATACGGCTAAACAACTGGATTCTTCCGTTGAAAAATTGTATCGCTTTGACATGGTACAATCGTGTCCACCAGTGGTCCCAAAAGCCAATATGTCCGCACCAACCATGGCATCTGGGTTGTTTCCTGAGTCTGCCTTCGTTGAAGAGTTGGTTAGGTCTGAGGGTCCATCTGTTGAGTACCATTGTAACTCCTGCTCAGCTGATTGCTCCCGCAAGCGTTACCATTGCCAGAAGCAGGCAGATTTCGACTTGTGTACTGAATGCTTCAATAACCAAAAGTTTGGCTCTGACATGTCCTCATCAGATTTCATTCTCATGGAGCCTGCCGAGGCGCCTGGAGTAAGTGGCGGGAAGTGGACTGATCAGGAGACCCTCCTACTCCTTGAAGCATTGGAGCTATATAAAGAAAACTGGAATGAGATTGCTGAGCATGTTGCCACGAAAACAAAAGCTCAGTGTATATTGCACTTTGTTCAAATGCCAATTGAGGACACCTTTATTGATTGTGAGGATGAAACTAATGTGAATCCCCAAGAAAATGCTGATCCAGTTTCAGCTAATAATGACTCGTCTGTTCCTAAAGACATCCCTGAATCAACAGAGAGCAAAACTGATGTTAGCGAGGGTCATCCCCCATCATCTGCAATGGAAACTTCAAAACCAGAGGGTCCACCTCTGTCTTCTCCAATGGAAACTTCAAAACCTGAGAGTCAGCCCCCACCATCCCCAATGGAAACTTCAAAACCAGAAGGAGGCAATGAAATGAAAGATAATCAGGAGACAGGTGAAGCTTGTGCCCTGAAGGCCCTTAGAGAAGCTTTTGAAGCAGTTGGTTCTCTTCCAACGCCTGGAGCCCCACTTACTTTTACTGATGCTGGGAACCCTGTCATGGCATTGGCAGTATTCCTGACCCAATTGGTGGGATCTGGTCGTGCTTCTGCTGCAGTTCATAGTTCTTTAAAATCCATGTCTAGCAATTCTCCTGGCATGCAACTAGCTGCAAGGCACTGCTATATTTTGGAAGATCCACCAGATGACAAGAAGGAGCAAGTTGGTTCTGAGAGTGCTACTGCTGAAATGGTTGACCAGGATGCCCACAAAGATGAAAACATGAAAGATGTGAACGAGAAAGATGAAAAACAGAAGGACGTAAACCAAAAAGATGCAAGCCAGGAGGATGAAAACCAGAAACATGAAAACCAGAAGGAATTGAATCAAAAAGAGGAAAACCAGAAGGATGTAAACCAGAGAGAGGAACACTCCATATCAATTTTGGAGGGCAGTGATACGTTAAAAGATCAGAATGAAAATAAAATTGAGGATTCTGTTCCAGAAGAAAAGTTATCGGTTCCTCCCAATGGTGAATGCACTGAGAAATCACTTGCTGCAAAAGAACCAGATGTTGTGGTTTCTAATGACAGTGAACCTGGTATTTTGAGTCAATCAAGCAATTCAGATTTGCCGAAGGATTGCCCGCCCAATTCTGTGGACAAATCAGATGATTTGACACCAAAGGCAGGGCTTCTGCCTAGTTCTATGAAGGAGTCGGGAGATGGAGCTTCAGTAAAGGACCACTCTCAACCTTCTGAGGCACCAAAGGATGTGGATACAGTGCCCGAGTCTCTGCCCCTACAAACAAAAGAGCCCCTGCAATCTCTTACCTCTAACACTTTGGTTGAGAATGGAGCAAATACAGGCAGGGATCAAACAAAGGAAGGTAAAAGCGAGAGCCATGACTCAAGCAAGACAAAACCGGATCCTAGTATTGATAAAATAAAGCGGGCTGCAACTTCTGCACTCTCAGCGGCAGCAGTGAAAGCAAAGCTTCTTGCAAATCAAGAAGAAGATCAAATCCAACAGTTTGCTACATTGTTGATTGAAAAGCAGCTGCATAAGCTAGAAACCAAATTGGCTTTCTTCAACGAGATGGAAAGTGTCATTACGAGGGTTAGGGAACAAATGGACAGGTCTAGGCAAAGACTCTACCATGAGCGGGCACAGATAATTGCAGCGCGACTTGGCTTTGCGGGTTCCTCATCTAGACCAACAGCCCCATCATTACCTATCAATAGACCTGGAATGAGCTTTCCAACTTCAGTTCCAAGGCCTCCAATGGGCATGACCTCTCAAAGGCCACCAATGTCGAGACCCATGATGATGGCTCCTTCCTCATTAAACACACTTGTATCTAGTACAGTGGCAGGAAGTTCAATTCGGCCTCCCAGCCAGGATAAACTTTCATCAGTCGGCACAAAGTAA 2952 46.27 MEEKRREAGSLPPASSSAGTRLAREKALAPPLASIHNGPCTRARQSPNNVSSAAAATAAASGALQKLDQPEAAPGASSSGAGLTAEELNVKNEDWEALEAEMAAEFEAIRSRDANVHVVPSSSGEIHLFTTLSTGWFSWTKVHPLEAQAMPSFFNGKSENRNPDMYKQIRDWIIKRFHGNPNTQIEVKDLSELEIGDLDARQEVMEFLDYWGLINFHPFLPAESSVANGDDDTAKQLDSSVEKLYRFDMVQSCPPVVPKANMSAPTMASGLFPESAFVEELVRSEGPSVEYHCNSCSADCSRKRYHCQKQADFDLCTECFNNQKFGSDMSSSDFILMEPAEAPGVSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDTFIDCEDETNVNPQENADPVSANNDSSVPKDIPESTESKTDVSEGHPPSSAMETSKPEGPPLSSPMETSKPESQPPPSPMETSKPEGGNEMKDNQETGEACALKALREAFEAVGSLPTPGAPLTFTDAGNPVMALAVFLTQLVGSGRASAAVHSSLKSMSSNSPGMQLAARHCYILEDPPDDKKEQVGSESATAEMVDQDAHKDENMKDVNEKDEKQKDVNQKDASQEDENQKHENQKELNQKEENQKDVNQREEHSISILEGSDTLKDQNENKIEDSVPEEKLSVPPNGECTEKSLAAKEPDVVVSNDSEPGILSQSSNSDLPKDCPPNSVDKSDDLTPKAGLLPSSMKESGDGASVKDHSQPSEAPKDVDTVPESLPLQTKEPLQSLTSNTLVENGANTGRDQTKEGKSESHDSSKTKPDPSIDKIKRAATSALSAAAVKAKLLANQEEDQIQQFATLLIEKQLHKLETKLAFFNEMESVITRVREQMDRSRQRLYHERAQIIAARLGFAGSSSRPTAPSLPINRPGMSFPTSVPRPPMGMTSQRPPMSRPMMMAPSSLNTLVSSTVAGSSIRPPSQDKLSSVGTK* 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5641164 5655774 + Vvi3g579 Vvi3g579 784254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g579 983 Coils Coil 621 649 - -
Vvi3g579 983 Coils Coil 85 105 - -
Vvi3g579 983 MobiDBLite consensus disorder prediction 951 983 - -
Vvi3g579 983 SUPERFAMILY RING/U-box 289 351 - -
Vvi3g579 983 Gene3D - 283 334 IPR043145 -
Vvi3g579 983 ProSiteProfiles SANT domain profile. 345 396 IPR017884 -
Vvi3g579 983 MobiDBLite consensus disorder prediction 573 821 - -
Vvi3g579 983 Pfam SWIRM-associated region 1 829 907 IPR032451 -
Vvi3g579 983 Gene3D - 345 396 - -
Vvi3g579 983 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 342 384 IPR017930 -
Vvi3g579 983 Pfam Zinc finger, ZZ type 290 326 IPR000433 GO:0008270
Vvi3g579 983 MobiDBLite consensus disorder prediction 404 489 - -
Vvi3g579 983 CDD ZZ_RSC8 291 335 IPR041984 -
Vvi3g579 983 SUPERFAMILY Homeodomain-like 135 217 IPR009057 -
Vvi3g579 983 MobiDBLite consensus disorder prediction 39 58 - -
Vvi3g579 983 SMART sant 346 394 IPR001005 -
Vvi3g579 983 Pfam Myb-like DNA-binding domain 348 390 IPR001005 -
Vvi3g579 983 PANTHER SWI/SNF COMPLEX-RELATED 17 948 - -
Vvi3g579 983 MobiDBLite consensus disorder prediction 775 797 - -
Vvi3g579 983 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 17 948 - -
Vvi3g579 983 MobiDBLite consensus disorder prediction 591 676 - -
Vvi3g579 983 MobiDBLite consensus disorder prediction 908 983 - -
Vvi3g579 983 MobiDBLite consensus disorder prediction 404 426 - -
Vvi3g579 983 MobiDBLite consensus disorder prediction 1 84 - -
Vvi3g579 983 ProSiteProfiles Zinc finger ZZ-type profile. 288 342 IPR000433 GO:0008270
Vvi3g579 983 SMART zz_5 287 331 IPR000433 GO:0008270
Vvi3g579 983 ProSitePatterns Zinc finger ZZ-type signature. 293 319 IPR000433 GO:0008270
Vvi3g579 983 ProSiteProfiles SWIRM domain profile. 128 225 IPR007526 GO:0005515
Vvi3g579 983 MobiDBLite consensus disorder prediction 798 821 - -
Vvi3g579 983 SUPERFAMILY Homeodomain-like 344 398 IPR009057 -
Vvi3g579 983 ProSiteProfiles Myb-like domain profile. 342 392 IPR001005 -
Vvi3g579 983 MobiDBLite consensus disorder prediction 705 721 - -
Vvi3g579 983 Pfam SWIRM domain 134 216 IPR007526 GO:0005515
Vvi3g579 983 CDD SANT 366 391 IPR001005 -
Vvi3g579 983 Gene3D - 134 218 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g579 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - vvi:100855339 1806.57
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g579 . . . . . . . . Cmo19g00671 . . . . . . . Cpe15g00532 Bhi05g01108 . . . . . . Cla02g00530 Cam02g0548 Cec02g0549 Cco02g0555 Clacu02g0549 Cmu02g0544 Cre02g0875 Cone12ag1145 Cone8ag1193 . . . . . . Blo04g00506 . . Bda14g00547 . . Bma03g00547 . . . . . Cma19g00658 . Car19g00501 . . . . . . . . . . . . . . . . Lsi11g01094 . Chy01g00796 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007586 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 3 1 2 2 1 1 1 1 1 2 1 1 1 1 1 36