Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g58 ATGGACGGGTCGTCGGTAGCGCTCGTCGAAGAAGCGAAGGCTACAGAGAGAGCGGAGAAAACACCAGGAGAACTTGTCGCCAAGGCCATCGTTCCTGTGAAGAGAGAGTTCCTTCGTCCTCCGCCTCTCAGGCCTTGTAACGACGTTGCTTCGGACTCCAAGTACACTCCTTCAACCTTCGTTAAGGAGAAGAAATCCAAACGCCAGCTCAAACGAGAACGCCGCCAGGAGCAAAAATCAGCCCTAAATATCTGTTCCGAGATTGCTAAGACAGGCAATGTTAATGCATGTCCTTATAATGAAAAGTGCCGCTTCAGCCATGACTTGGAAGCCTACAAGGCTCAGAAACCAGATGATTTAGAGGGAAGCTGTCCCTTCACAAGTGCTGAAGGAGCATGCCCTTATGGTTTGGCTTGTAGATTTTCTGGTACCCATAAAGATGGTGTTGCTGCTGGAAATTTGAATCTTCATAAGAAAAACTCTGAAATTAATGGACTGAACAAAGATGTTCAGAAGCTTTTGTGGAAAAACAAGATAAGGTTCCCCAAGGCAGATGCTAAACTCAAACTTCTTGGTCTTCTGGGGAAGGCCAATTCAAAAATTAAAACATTCGAAGATAAAGGGGAAGGTGATCTGAAAGTTTCAAATGGTACTCATGCTACTAATGATAATAGTTGTGGTGAATTGGTCATTGACTCAGATAATAAAGTAGAGGGCTCTCCAAAAATGCCAGAAGAGGATGATGTTGAGGGATTTGCAACTGATGAACCTAGACCCACGAAGAAAATAAAATCTGCAACTAATGAGGAGTGTTGCACTGGAAATGCAGATAATGGTGCATCTGTCCAGGAGAAAGATTTAGGGAAAAGCTGTGCCCAAATTGAACCAGAGTCAGCAACTGATAATATTTTTTCTGAAAGTGATGGTAGTCTAAAATTGCACCCACGTGAGAAGAAGCTTATTGATTTTAGAGAAAAGTTGTATCTTGCACCTCTAACCACTGTTGGGAATCTTCCTTTCCGAAGGGTTTGCAAGATGTTGGGAGCGGATGTAACATGTGGGGAAATGGCAATGTGCACAAATCTCTTGCAGGGTCAAGCTTCAGAATGGGCACTGCTGAGGCGACATTCAGCAGAGGATTTGTTTGGCGTACAGATATGTGGGGCATATCCTGATACTGTGGCACGTACTGTTGAACTCATAGACCAGGAGTGTGAAGTGGACTTCATTGATATAAACATGGGCTGCCCAATAGATATTGTCGTTAACAAGGGTGCTGGGTCAGCTCTTCTTACAAAGCCAATGCGAATGAAAAACATTATAGAAGCAGCTTCTGGCATAGTGGACAAACCTATAACTGTCAAGGTGCGAACAGGTTTTTTAGAAGGGCGAAATCGAGTTGATTCATTAATTGCAGATATTGGCCAATGGGGAGCCAATGTGGTAACCATACATGGTCGTTCACGTCAGCAACGCTATAGCAAGCTTGCTGATTGGGAGTACATATATCAGTGTGCGAGAAAAGCCCCTGAAGCTCTGCAAGTCCTGGGAAATGGGGACATCTTTTCATATTTAGACTGGAACAAGCACAAGTCAGGCTGTCCTGAGCTTTCTACATGCATGATTGCTCGAGGGGCTTTAGTTAAGCCTTGGATATTTACCGAAATCAAGGAACAGAGACACTGGGATATCAGTTCTGGGGAAAGGTTAAATATTTTGAAGGATTATGTTCGGTGTGGCCTTGAACATTGGGGTTCTGACACAAAAGGAGTTGAGACGACGAGGCATTTCATGCTGGAATGGCTTAGCTACACATACAGATACGTCCCTGTTGGTCTGTTAGATGTTATCCCACAACAGCTGAACTGGCGGCCACCCTCCTACTTTGGCCGCGATGACCTTGAGACTCTAATGGCCTCTGATTCTGCAGCTGACTGGATTCGAATCTCTGAGATGTTGCTTGGCAAGGTTCCTCCAGGCTTCACATTTGCACCAAAGCACAAATCCAATGCTTATGACAGAGCAGAAAACGGTTAA 2037 44.62 MDGSSVALVEEAKATERAEKTPGELVAKAIVPVKREFLRPPPLRPCNDVASDSKYTPSTFVKEKKSKRQLKRERRQEQKSALNICSEIAKTGNVNACPYNEKCRFSHDLEAYKAQKPDDLEGSCPFTSAEGACPYGLACRFSGTHKDGVAAGNLNLHKKNSEINGLNKDVQKLLWKNKIRFPKADAKLKLLGLLGKANSKIKTFEDKGEGDLKVSNGTHATNDNSCGELVIDSDNKVEGSPKMPEEDDVEGFATDEPRPTKKIKSATNEECCTGNADNGASVQEKDLGKSCAQIEPESATDNIFSESDGSLKLHPREKKLIDFREKLYLAPLTTVGNLPFRRVCKMLGADVTCGEMAMCTNLLQGQASEWALLRRHSAEDLFGVQICGAYPDTVARTVELIDQECEVDFIDINMGCPIDIVVNKGAGSALLTKPMRMKNIIEAASGIVDKPITVKVRTGFLEGRNRVDSLIADIGQWGANVVTIHGRSRQQRYSKLADWEYIYQCARKAPEALQVLGNGDIFSYLDWNKHKSGCPELSTCMIARGALVKPWIFTEIKEQRHWDISSGERLNILKDYVRCGLEHWGSDTKGVETTRHFMLEWLSYTYRYVPVGLLDVIPQQLNWRPPSYFGRDDLETLMASDSAADWIRISEMLLGKVPPGFTFAPKHKSNAYDRAENG* 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 694533 700837 + Vvi3g58 Vvi3g58 783733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g58 678 MobiDBLite consensus disorder prediction 1 20 - -
Vvi3g58 678 SUPERFAMILY FMN-linked oxidoreductases 326 639 - -
Vvi3g58 678 MobiDBLite consensus disorder prediction 215 229 - -
Vvi3g58 678 MobiDBLite consensus disorder prediction 215 266 - -
Vvi3g58 678 Gene3D - 74 151 - -
Vvi3g58 678 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 30 678 - -
Vvi3g58 678 Pfam Dihydrouridine synthase (Dus) 329 597 IPR035587 -
Vvi3g58 678 ProSitePatterns Uncharacterized protein family UPF0034 signature. 410 428 IPR018517 GO:0008033|GO:0017150|GO:0050660
Vvi3g58 678 CDD DUS_like_FMN 326 561 IPR035587 -
Vvi3g58 678 ProSiteProfiles Zinc finger C3H1-type profile. 79 110 IPR000571 GO:0046872
Vvi3g58 678 Gene3D Aldolase class I 322 564 IPR013785 -
Vvi3g58 678 SMART c3hfinal6 120 145 IPR000571 GO:0046872
Vvi3g58 678 SMART c3hfinal6 79 109 IPR000571 GO:0046872
Vvi3g58 678 MobiDBLite consensus disorder prediction 238 265 - -
Vvi3g58 678 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 30 678 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g58 K05544 DUS3; tRNA-dihydrouridine synthase 3 [EC:1.3.1.89] - vvi:100262408 1352.81
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g58 . . . . . . . . Cmo19g00714 . . . . . Sed05g2278 . Cpe15g00570 Bhi05g01772 Tan02g0739 Cmetu01g1464 . Hepe02g0458 . . Cla02g00473 Cam02g0479 Cec02g0481 Cco02g0486 Clacu02g0483 Cmu02g0478 Cre02g0813 Cone12ag1198 . . . . Csa07g00053 . Cme01g01317 Blo04g00545 . . Bda14g00584 Bpe15g00836 . Bma03g00578 . . . . . Cma19g00705 . Car19g00544 . . . . . . . . . . . . . . . . Lsi11g01152 . Chy01g00729 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011659 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14670 PF01207 Dus 9.70E-52 CL0036 Vvi TF