Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g580 ATGATATTAATAGAAAATATAGATATCGAGTTAGAAAGTAACAAGAAACAAACAGAAGGAAGAATCAAGATTCAGAAGAGGGGGCGAGTAGAGAGAGGGGGGAGTACAGATCCATCGAATTCTCTGTCCCGACTCCCTACAATGCCTTCTCGCAGGAGAACGCTTCTCAAGGTCATCATCCTCGGCGATAGCGGGGTGGGGAAGACCTCTTTGATGAACCAATATGTGAATAAGAAGTTTAGCAATCAATACAAGGCAACTATCGGAGCTGATTTTTTGACGAAGGAAGTGCAGTTCGAAGATAGGCTCTTCACTTTACAGATCTGGGATACAGCTGGCCAGGAAAGATTCCAAAGTCTAGGTGTTGCTTTCTACCGTGGTGCTGATTGCTGTGTTCTTGTATATGATGTTAATGTGATGAAGTCATTTGACAATCTAAACAATTGGAGGGAAGAATTTCTCATTCAGGCAAGTCCTTCAGATCCAGAAAATTTCCCTTTTGTTGTTCTAGGAAACAAGGTTGATGTGGATGGTGGAAACAGCAGGGTGGTTTCAGACAAAAAAGCTCGAGCTTGGTGTGCCTCAAAAGGAAATATTCCATACTTTGAGACCTCTGCCAAAGAGGGTATCAACGTTGAAGAAGCCTTCCAGTGCATAGCAAAGAATGCCCTCAAGACTGGGGAAGAGGAAGAGATATACTTGCCTGACACCATTGATGTTGGAAGCAGCAGCCAGCAAAGGTCAAGTGGATGCGAATGCTAA 762 43.57 MILIENIDIELESNKKQTEGRIKIQKRGRVERGGSTDPSNSLSRLPTMPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSDKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKTGEEEEIYLPDTIDVGSSSQQRSSGCEC* 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5657468 5670765 - Vvi3g580 Vvi3g580 784255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g580 253 Pfam Ras family 57 224 IPR001806 GO:0003924|GO:0005525
Vvi3g580 253 TIGRFAM small_GTP: small GTP-binding protein domain 56 219 IPR005225 GO:0005525
Vvi3g580 253 PRINTS Transforming protein P21 ras signature 56 77 - -
Vvi3g580 253 PRINTS Transforming protein P21 ras signature 79 95 - -
Vvi3g580 253 PRINTS Transforming protein P21 ras signature 97 119 - -
Vvi3g580 253 PRINTS Transforming protein P21 ras signature 163 176 - -
Vvi3g580 253 PRINTS Transforming protein P21 ras signature 201 223 - -
Vvi3g580 253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 228 IPR027417 -
Vvi3g580 253 Gene3D - 49 235 IPR027417 -
Vvi3g580 253 ProSiteProfiles small GTPase Rho family profile. 49 227 - -
Vvi3g580 253 PANTHER RAB FAMILY 48 253 - -
Vvi3g580 253 PANTHER RAS-RELATED PROTEIN RABG3F 48 253 - -
Vvi3g580 253 CDD Rab7 56 229 - -
Vvi3g580 253 SMART ran_sub_2 61 248 - -
Vvi3g580 253 ProSiteProfiles small GTPase Rab1 family profile. 50 253 - -
Vvi3g580 253 MobiDBLite consensus disorder prediction 24 47 - -
Vvi3g580 253 SMART rho_sub_3 58 226 IPR001806 GO:0003924|GO:0005525
Vvi3g580 253 SMART ras_sub_4 53 226 - -
Vvi3g580 253 SMART rab_sub_5 56 226 - -
Vvi3g580 253 ProSiteProfiles small GTPase Ras family profile. 50 253 IPR001806 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g580 K07897 RAB7A; Ras-related protein Rab-7A - vvi:100853135 419.853
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g580 . . . . . Bpe12g00077 . . Cmo19g00673 . . . . . . . Cpe15g00533 Bhi05g01223 Tan02g0809 . . Hepe02g0515 . . Cla02g00529 Cam02g0547 Cec02g0548 Cco02g0554 Clacu02g0548 Cmu02g0543 Cre02g0874 Cone12ag1146 Cone8ag1194 Cone3ag1157 Cone10ag1166 Lsi10g00673 . . Cme01g01430 Blo04g00507 Blo13g00556 Bda15g00017 Bda14g00548 . . . . . . . . Cma19g00659 . Car19g00502 . Cpe01g00429 . . . . . . . . . . . . . . Lsi11g01095 . Chy01g00795 Cme11g00207
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001330 4 2 4 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 2 2 2 3 2 1 2 1 2 4 3 2 74