Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g581 ATGTTGGTTTATGAATTTGTCCCTAATAACACCCTTGAATACCACCTCCATGGAAAGGGTCGTCCAACCATGGAATGGTCTACGAGGCTCAAAATTGCAATGGGATCAGCCAAGGGGCTTGCTTACCTTCATGAAGATTGTCACCCCCGTATTATTCATAGAGACATCAAAACTGCGAACATTCTTCTCGACTTCAATTTTGAAGCCAAGGTGGCAGATTTTGGACTAGCTAAGCTTTCTTCCGACACCAATACTCATGTGTCAACACGCATCATGGGAACATTCGGGTATCTGGCCCCTGAGTATGCCTCAAGTGGCAAGCTAACCGAGAAATCCGATGTGTTTTCATTCGGTGTTATGCTTCTTGAACTCATAACTGGAAAACGCCCTGTAGAATCTGATATGGAAGACAGCTTAGTAGACTGGGCTAGGCCTATTCTGTTGCGGGCATTGGAAGACGGAAACTATGAAGAGCTGGTTGATCCTCGCCTGGAGAAAAATTACAAACCCCAGGAGATGGTGCGCCTCATCGCTTGCGCCGCTGCATGCATCAGGCATTCTGCAAGGCGGCGACCGAAAATGAGCCAGACTGTACGAGCTTTGGAAGGGGACGTCTCACTGGATGACTTGAACGAGGGCGTGAAACCAGGCCAAAGTTCAGTATTTGGCTCCGATGGCAGCACTGACTACGACAAGGGCTCATATAATGCGGATATGAAGAAGTTCAGGCGGATGGCGTTGTCGAGCCAGGATTATGAAAGCAGTACTGAGTATGGATTCACCAGCGACTACGGAAACAACGAAGCCTCCTCCAGCGCCAGCGGTGACTCGCTAGAACTGGGTCAGCGTAGGGCCTCAAGGCGGATTTGA 870 49.31 MLVYEFVPNNTLEYHLHGKGRPTMEWSTRLKIAMGSAKGLAYLHEDCHPRIIHRDIKTANILLDFNFEAKVADFGLAKLSSDTNTHVSTRIMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVESDMEDSLVDWARPILLRALEDGNYEELVDPRLEKNYKPQEMVRLIACAAACIRHSARRRPKMSQTVRALEGDVSLDDLNEGVKPGQSSVFGSDGSTDYDKGSYNADMKKFRRMALSSQDYESSTEYGFTSDYGNNEASSSASGDSLELGQRRASRRI* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5671229 5673586 + Vvi3g581 Vvi3g581 784256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g581 289 MobiDBLite consensus disorder prediction 250 279 - -
Vvi3g581 289 MobiDBLite consensus disorder prediction 250 289 - -
Vvi3g581 289 SMART serkin_6 2 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g581 289 MobiDBLite consensus disorder prediction 208 230 - -
Vvi3g581 289 ProSiteProfiles Protein kinase domain profile. 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g581 289 ProSitePatterns Serine/Threonine protein kinases active-site signature. 51 63 IPR008271 GO:0004672|GO:0006468
Vvi3g581 289 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 259 - -
Vvi3g581 289 SUPERFAMILY Protein kinase-like (PK-like) 1 201 IPR011009 -
Vvi3g581 289 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 1 259 - -
Vvi3g581 289 Pfam Protein tyrosine and serine/threonine kinase 1 200 IPR001245 GO:0004672|GO:0006468
Vvi3g581 289 Gene3D Transferase(Phosphotransferase) domain 1 7 212 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g581 Vvi4g952 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76574 PF07714 PK_Tyr_Ser-Thr 6.80E-31 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g581 - - vvi:100855412 579.326