Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g583 ATGCTTCACTCCCTCCATATCCCAACCATATCTTCCATCAAAAGCCCTAGTTCTCAATCTCTCTCTTCTTCTGAACACCCTCCTTATCTGCTCAGATTCCGTACATCCCACCGTGAAAATCTCCGGTACCTCAAAACCCTGGGCATCATCGATCCAAGCACCAAACCACACAAATTTCCATCGCCAGAAGCCGTAGATCAGGTCCTTTCCACTGTGAATTTCCTTAAATCTAAGGGATTCTCCGAGCCCGATTTCCCCAGACTCTCCTTCCTCTGCCCAAAACTATTCTCTTCCGACTCCGACCCCACCGACATCGAACCGGTTTTTGATTTCCTAACCTTAGATTTGGCCGCGTCGGATCAAGAATCATGCAGTTTGATTCTCCGGTGCCCTCAGATTCTGCTCTCGGATGTAGAGTACTGTTTGAGGCCAACACTTCTTTATTTAAGAAAATTGGGAGTAGAGAAGCTCAATGTGCCTACTTCGCTTAACGCCCATCTTTTGAACACTCGGGTGGAGAGGCTTGTGGCGAAGATTAGGTTTTTGCGGAGCGTGGGATTATCGTACGAGGAATCCGCTAGGGCTTGTGGGCGGTTTCCGGCCGTTTTTGGTTATAGTATTGAGAATAATTTGAAGCCCAAGTTTAATTATTTGGTGAGGGAGATGAAGAGGAGTGTTGAGGAATTGAAGGTGTTTCCGCAGTACTTCGCATTTAGCTTGGAGAATCGGATAATGCCGAGGCATTTGCATTTGGAGCAGAGGAATGTTCGGATTTCATTGAAGAGAATGCTATTGTGGAGCGATCAAAAGTTTTATGCGAAATGGAAGTGA 831 46.33 MLHSLHIPTISSIKSPSSQSLSSSEHPPYLLRFRTSHRENLRYLKTLGIIDPSTKPHKFPSPEAVDQVLSTVNFLKSKGFSEPDFPRLSFLCPKLFSSDSDPTDIEPVFDFLTLDLAASDQESCSLILRCPQILLSDVEYCLRPTLLYLRKLGVEKLNVPTSLNAHLLNTRVERLVAKIRFLRSVGLSYEESARACGRFPAVFGYSIENNLKPKFNYLVREMKRSVEELKVFPQYFAFSLENRIMPRHLHLEQRNVRISLKRMLLWSDQKFYAKWK* 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5686086 5687004 - Vvi3g583 Vvi3g583 784258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g583 276 Gene3D Transcription termination factor 3, mitochondrial 35 276 IPR038538 -
Vvi3g583 276 PANTHER CGI-12 PROTEIN-RELATED 15 276 IPR003690 GO:0003690|GO:0006355
Vvi3g583 276 MobiDBLite consensus disorder prediction 1 25 - -
Vvi3g583 276 MobiDBLite consensus disorder prediction 8 25 - -
Vvi3g583 276 Pfam mTERF 67 157 IPR003690 GO:0003690|GO:0006355
Vvi3g583 276 Pfam mTERF 116 271 IPR003690 GO:0003690|GO:0006355
Vvi3g583 276 SMART mt_12 86 119 IPR003690 GO:0003690|GO:0006355
Vvi3g583 276 SMART mt_12 160 188 IPR003690 GO:0003690|GO:0006355
Vvi3g583 276 SMART mt_12 226 257 IPR003690 GO:0003690|GO:0006355
Vvi3g583 276 SMART mt_12 193 225 IPR003690 GO:0003690|GO:0006355
Vvi3g583 276 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
Vvi3g583 276 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC 15 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g583 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - vvi:100853221 529.635
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g583 . . . . . . . . . . . . . . . Cpe04g00251 . . . . . . . . . . . . . . . . . . . . Csa07g00824 . . . . . . . . . . . . . . . Car11g01067 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012267 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14671 PF02536 mTERF 5.00E-31 No_clan Vvi TR