Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g587 ATGACGGCACCGGTGGAGGAGAGGCGACTGTTGCAGCCGATACGCTGCCTCTTCTTGATTCCCCCGCCGCCGCTGCCTGCCGTCATTTATGGGATGATATTCTCGAATCAGATTAGACGTGTTTGGATAACGAGAAAGTGCAGATTTGCAGAACTTTGGTGCTTGTTCGTAACATTTGAACACTCGAGAAGTTACAACAGATTCTCAGATGTACACGTGTACGGAAGATATAGCGAATACGTCATTGTTCTGGCTTTCTCCAGTTATTCTAGGTGGGCCCTCCATTGCCATTTGATGTGTAATAAACTTGCGATCTTTTCTCATCCATTAGAACAGAATTCCAACGTTTTCTCTGGAAATTTAGTGTTCGTTTTGCCGGAAATAATGGCGTCTTCCGGCTATGCTCCCAACGACTCCGTGTCTAACAAAGTCACAGAGAAAACGTCGGTTTTAGGGTTGAAGCTCTATGTTGTCATCGCAATAGTTGCCATAGTTGTCATAGCCGTTTCACTTCTGATCTTTCTCCGTCTACGTTATAAACGGAAGTCCAGGAAGCGTCAAGTGCTCGAGAAGCGCGGTTCGGGTTTGATTCCTCTGGTTTCGAAGGAGATCGTGGAAATCAAAGGCGCGGATCGTGTGGAAGAGATTAAGATCGTGGAGGCGCAGAACATCGGGTGGGGACGGTGGTACAGTTTAAGAGAGCTGGAGATGGCGACCAATGGATTTGTCGAAGAAAATGTGATTGGAGAAGGAGGCTATGGTGTGGTTTACAGAGGGGTTTTGCCCGATGGCTCTGTAGTGGCCGTGAAGAATCTGCTGAACAATAAAGGGCAGGCACAGAGGGAGTTCAAGGTGGAAGTTGAAGCCATTGGAAAAGTAAGACATAAGAACTTGGTAGGCCTAGTTGGGTATTGTGCAGAAGGTCCCCAAAGGATGCTTGTTTATGAATATGTTGACAATGGCAATTTGGAGCAGTGGTTGCATGGTGATGTAGGGCCTGTCAGTCCTCTAACATGGGATATTCGGATGAAGATTGCTGTTGGAACTGCAAAAGGGCTTGCCTATTTGCATGAAGGGTTAGAACCCAAAGTTGTACACCGAGATGTAAAATCCAGTAACATTCTTCTGGATAGAAAGTGGAACCCAAAAGTATCAGATTTTGGACTAGCCAAGCTCTTAGGATCTGAGGCAAGCTATGTCACTACACGAGTAATGGGAACCTTTGGATATGTCTCTCCCGAGTATGCAAGCACGGGTATGCTTAGTGAAGGGAGTGATGTCTATAGTTTTGGAGTTCTACTTATGGAGATAATTACTGGAAGGAGCCCGGTTGATTATTCCAGACCAGTTGGAGAGATGAACTTAGTTGATTGGTTTAAAGGAATGGTAGCTGGTCGTCGTGGAGAAGAGCTGGTGGACCCTTTGATTGAAGTTCAACCCTCTCCAAGAGCTTTGAAGCGGGCATTGCTGGTTTGTCTCCGCTGTATAGATTTGGATGCCAATAAGCGGCCAAAGATGGGGCAGATTGTGCATATGCTTGAGGCGGATGAGTTCCCATTCCGTGCTGAACACCGATTGGCCCGAGAGACAGATCCTCTCCCTTCCCGTGTTGCTGTGACTGATAAAATATCTCCTCCAATCAAGCATGCTGGGAGTCATGATGTGGAGAAATCTAAGTGGAGATGA 1686 46.68 MTAPVEERRLLQPIRCLFLIPPPPLPAVIYGMIFSNQIRRVWITRKCRFAELWCLFVTFEHSRSYNRFSDVHVYGRYSEYVIVLAFSSYSRWALHCHLMCNKLAIFSHPLEQNSNVFSGNLVFVLPEIMASSGYAPNDSVSNKVTEKTSVLGLKLYVVIAIVAIVVIAVSLLIFLRLRYKRKSRKRQVLEKRGSGLIPLVSKEIVEIKGADRVEEIKIVEAQNIGWGRWYSLRELEMATNGFVEENVIGEGGYGVVYRGVLPDGSVVAVKNLLNNKGQAQREFKVEVEAIGKVRHKNLVGLVGYCAEGPQRMLVYEYVDNGNLEQWLHGDVGPVSPLTWDIRMKIAVGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRKWNPKVSDFGLAKLLGSEASYVTTRVMGTFGYVSPEYASTGMLSEGSDVYSFGVLLMEIITGRSPVDYSRPVGEMNLVDWFKGMVAGRRGEELVDPLIEVQPSPRALKRALLVCLRCIDLDANKRPKMGQIVHMLEADEFPFRAEHRLARETDPLPSRVAVTDKISPPIKHAGSHDVEKSKWR* 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5738844 5760758 - Vvi3g587 Vvi3g587 784262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g587 561 ProSiteProfiles Protein kinase domain profile. 242 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g587 561 SUPERFAMILY Protein kinase-like (PK-like) 226 519 IPR011009 -
Vvi3g587 561 Pfam Protein kinase domain 243 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g587 561 MobiDBLite consensus disorder prediction 531 561 - -
Vvi3g587 561 ProSitePatterns Protein kinases ATP-binding region signature. 248 270 IPR017441 GO:0005524
Vvi3g587 561 SMART serkin_6 242 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g587 561 CDD STKc_IRAK 248 514 - -
Vvi3g587 561 Gene3D Transferase(Phosphotransferase) domain 1 318 526 - -
Vvi3g587 561 Gene3D Phosphorylase Kinase; domain 1 201 317 - -
Vvi3g587 561 MobiDBLite consensus disorder prediction 547 561 - -
Vvi3g587 561 PANTHER OS01G0323000 PROTEIN 137 212 - -
Vvi3g587 561 PANTHER OS01G0323000 PROTEIN 217 530 - -
Vvi3g587 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 364 376 IPR008271 GO:0004672|GO:0006468
Vvi3g587 561 PANTHER OS03G0227900 PROTEIN 217 530 - -
Vvi3g587 561 PANTHER OS03G0227900 PROTEIN 137 212 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g587 Vvi18g746 ECH
Vvi3g587 Vvi7g1058 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76575 PF00069 Pkinase 4.60E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g587 - - vvi:100852435 794.267