Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g592 ATGGCGGAAGAAGCCATATTAGGTCATCTGGAGAAGAATGTCGAAATCTCCGATTCAGGCGACTTCGCTTCCCAAAGCGGAATCGACCACAACGAGATTGTCAACGTCATCAAGAGCCTCCACGGTTTCAGACTCGTCGATGCTCAGGATATCAAGAGGGAAAAGTGGGTGCTCACCGATGAAGGCAAGTTATATGCTGCGGCTGGCTCACCGGAAGTGCAATTGTTCTTGGCCGTACCACCTGAGGGCATATCACGAGAAGAACTGCAGAGAAAGGTTGACCCCTCGGTGTACAAAATAGGTTGCTCACAGGCCATAAAGAATAAATGGTTGGAGATAGGAAAACAACAAGTGTCCAGAAAGGTTCAACAAGTGGAGGACACAGCCAAAGATCTGCTTACACGGATCCAAAATGAGGAGGCACTTAGCCAAGCTGACATTGACGCTCTCAAACGAAGAAAGCTTATTGCTCTGCAGACATGGAAAGGTTACTCAGTGAGAAAAGGTCCTAATTATGCTCCCAAGAGAAAGAAAGTTGCTACTGATTTGACTCGAGAAAATCTGCAAAGGGGTGATTGGAAGGAGCTAGAGTTCAAAGAGTATAATTTCAATGCCAAAGGTCAATCTGCTGAAGGTGGCCATCTTCATCCATTGCTCAAGGTACGGCGACAACTGCAGATGATTTTTCTCCAAATGGGTTTTGAGGAGATGCCAACAAACAATTTTGTTGAAAGCAGCTTCTGGAATTTTGATGCACTGTTCCAGCCACAACAACACCCTGCTCGTGATTCACATGATACCTTCTTCCTGCAAGCTCCTTCCACTACAAAGATGCTGCCTGAAGATTATGTTGAGCGGGTGAAGCATGTTCATGAGCATGGTGGTTATGGATCCAGAGGATATGGATATGATTGGAAAAGGGAGGAAGCAAACAAGAACCTACTGCGAACTCACACCACTGCTGTTTCCTCAAGGATGCTTTACTTGCTAGCACAGAAACCTTTTGCCCCTAAAAAGTACTACTCCATTGATCGTGTTTTCAGAAATGAAGCTGTTGATCGAACACATCTTGCAGAGTTTCATCAGATAGAAGGCCTTGTATGTGATAGGGGGCTAACTCTTGGCGATCTGATTGGAGTCTTACAGGACTTCTTTTCACGTCTAGGAATGTCCCAGCTACGTTTCAAGCCTGCTTACAATCCATACACTGAACCCAGCATGGAAATCTTCAGTTATCATGAAGGCTTGAAGAAATGGGTAGAGATAGGAAATTCTGGCATGTTCAGACCTGAAATGTTGCTTCCTATGGGACTCCCAGAAGATGTCCGGGTTATTGCATGGGGCCTTTCCCTTGAGAGACCAACCATGATATTGTATGGTGTAGACAACATTCGGGATCTCTTCGGGCACAAGGTGGATCTTGGACTCATCAAGAGAAACCCAATATGTCGCCTTGGAATTGAGTAG 1467 45.54 MAEEAILGHLEKNVEISDSGDFASQSGIDHNEIVNVIKSLHGFRLVDAQDIKREKWVLTDEGKLYAAAGSPEVQLFLAVPPEGISREELQRKVDPSVYKIGCSQAIKNKWLEIGKQQVSRKVQQVEDTAKDLLTRIQNEEALSQADIDALKRRKLIALQTWKGYSVRKGPNYAPKRKKVATDLTRENLQRGDWKELEFKEYNFNAKGQSAEGGHLHPLLKVRRQLQMIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLQAPSTTKMLPEDYVERVKHVHEHGGYGSRGYGYDWKREEANKNLLRTHTTAVSSRMLYLLAQKPFAPKKYYSIDRVFRNEAVDRTHLAEFHQIEGLVCDRGLTLGDLIGVLQDFFSRLGMSQLRFKPAYNPYTEPSMEIFSYHEGLKKWVEIGNSGMFRPEMLLPMGLPEDVRVIAWGLSLERPTMILYGVDNIRDLFGHKVDLGLIKRNPICRLGIE* 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5790696 5798203 + Vvi3g592 Vvi3g592 784267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g592 488 Pfam PheRS DNA binding domain 1 3 56 IPR040724 -
Vvi3g592 488 PANTHER PHENYLALANYL-TRNA SYNTHETASE 3 486 - -
Vvi3g592 488 TIGRFAM pheS: phenylalanine--tRNA ligase, alpha subunit 170 480 IPR004529 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Vvi3g592 488 Gene3D - 71 125 - -
Vvi3g592 488 Coils Coil 115 153 - -
Vvi3g592 488 SUPERFAMILY Class II aaRS and biotin synthetases 208 473 IPR045864 -
Vvi3g592 488 Pfam PheRS DNA binding domain 3 70 125 IPR040725 -
Vvi3g592 488 PANTHER PHENYLALANINE--TRNA LIGASE ALPHA SUBUNIT 3 486 - -
Vvi3g592 488 Gene3D Bira Bifunctional Protein; Domain 2 216 487 IPR045864 -
Vvi3g592 488 CDD PheRS_alpha_core 216 473 - -
Vvi3g592 488 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 220 481 IPR006195 -
Vvi3g592 488 Pfam tRNA synthetases class II core domain (F) 201 473 IPR002319 GO:0000049|GO:0004812|GO:0005524|GO:0043039
Vvi3g592 488 Gene3D - 7 199 - -
Vvi3g592 488 Gene3D - 58 156 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g592 K01889 FARSA, pheS; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] - vvi:100853559 991.875
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g592 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01396 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005750 2 1 1 3 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 37