Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g594 ATGAATATCAAGGAGCTGGTTACAAACCTGCCTGTTTACAGAAGTGCTAGTGATGTCTCTGGAGAAGGATTGGGTTTAATTTTCATGCGATGGGCCTCCAAAAAGACAGCAGGATCCACAAAGAATGGAAGGGACTCCAAACCCAAGAATCTTGGGGTGAAGAAATTTGGTGGAGAGAGAGTGATACCTGGGAACATTATTGTTCGTCAACGTGGCACCCGTTTCCATCCAGGAAACTACGTTGGAATTGGAAAGGATCACACCCTATATGCTCTGAAAGAAGGTTGTGTTAAGTTTGAGAAACACAAGCTCAGTGGACGGAAGTGGGTACATGTTGAGCCCAAAGACGGGCATGTACTTCACCCTGTCTATGCAGATGCTGCTGCTCCTAGGCTCAAGACAACTGTTTAA 411 45.74 MNIKELVTNLPVYRSASDVSGEGLGLIFMRWASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLYALKEGCVKFEKHKLSGRKWVHVEPKDGHVLHPVYADAAAPRLKTTV* 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5801292 5802070 + Vvi3g594 Vvi3g594 784269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g594 136 Hamap 50S ribosomal protein L27 [rpmA]. 31 115 IPR001684 GO:0003735|GO:0005840|GO:0006412
Vvi3g594 136 Pfam Ribosomal L27 protein 32 112 IPR001684 GO:0003735|GO:0005840|GO:0006412
Vvi3g594 136 PRINTS Ribosomal protein L27 signature 34 58 IPR001684 GO:0003735|GO:0005840|GO:0006412
Vvi3g594 136 PRINTS Ribosomal protein L27 signature 59 83 IPR001684 GO:0003735|GO:0005840|GO:0006412
Vvi3g594 136 PRINTS Ribosomal protein L27 signature 84 108 IPR001684 GO:0003735|GO:0005840|GO:0006412
Vvi3g594 136 SUPERFAMILY Ribosomal L27 protein-like 32 111 - -
Vvi3g594 136 Gene3D - 36 128 - -
Vvi3g594 136 PANTHER 50S RIBOSOMAL PROTEIN L27-LIKE 1 135 - -
Vvi3g594 136 PANTHER RIBOSOMAL PROTEIN L27 1 135 IPR001684 GO:0003735|GO:0005840|GO:0006412
Vvi3g594 136 TIGRFAM L27: ribosomal protein bL27 32 112 IPR001684 GO:0003735|GO:0005840|GO:0006412
Vvi3g594 136 ProSitePatterns Ribosomal protein L27 signature. 64 78 IPR018261 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g594 K02899 RP-L27, MRPL27, rpmA; large subunit ribosomal protein L27 - vvi:100853593 283.108
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g594 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag1172 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010646 1 0 1 0 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 0 1 2 1 3 0 1 29