Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g595 ATGATAATGCGGGCTCTGGAGATTCGCCGGAATGTAACGGTGGAGATTTTCAAGGAAGCAATGCGGAAGGGCAAGTTTGGGATCACTTACTCCAATAATTTGGTGTCTAGGTTGCCTGATTTTATTGACTATGTCATGATTGAAGCGGCTTCCATGAAGCAGTTGCCTGAATTCTCCCATTCAACGTTTAATACGCGTGCCAAGACTGTCATACATGACTCCAATGTGGTGCCACTCATCAGGTGGTTGAAACACAATTCACTCTCATATCCACGAATTGGAAAGCTAATATGCATGTCAATGGGAAATCTTGAGACTATAAGAGGACTTGTTGAGTGGTTGAAGACAATTCATGTGAGGGGGGAATTTCTTGGGTTTGTGATCATGAAAGCAGGAGGGGATATTTTGGAGCGCAGCATAGAGGAATTGGATGACATTGTCAGGTATCTAGAGAACAATGGGGTACGGAGGGATTGGATGGGTAATGTGATGAGCCGATGCCCTCAATTGTTGTCTTACAGCATCGAGGAAGTGAAAACTCGTGTGGGGTTCTACTTGGATATGGGTATGAATGAGAAGGATTTTGGCACAATGGTCTTTGATTATCCCAAGGCACTTGGCTACTTTACTCTGGAAGAGATGAACGAAAAGGTTAGTTATCTAAAGGAGTTTGGCCTCAACAATGAAGATGTAGGGAGATTACTAGCATTTAAGCCGCAACTGATGGGTTGTAGCATTGAGGAAAGATGGAAGCCTTTTGTTAAGTATCTGTACTACCTTGGGGTTTGCCGAGAGGGTATGAGGAGAATGCTTATCATCAAACCAATGGTTTTTTGTGTTGATTTAGAGAAAACCATTGTACCAAAGGTACGGTTTTTTCAGGACATAGGCATTCGAGATGATGCCATTGGTAACATGCTTGTTAAGTTTCCTCCATTACTAACATACAGCCTCTACAAGAAAATTCGCCCAGTGGTCATTTTCTTGATTACTAAAGCTGGAGTCAGCCGGAAAGATATTGCAAAGGTAATAGCTCTGGGACCTGAGCTCTTGGGATGCAGTATTGTGCATAAGCTGGAGGTTAACGTGAAGTACTTTCTCTCACTTGGAATACCCCTTCAAATACTGGGTGAGATGATAGCTGATTTTCCCATGCTACTGCGGTACAATATAGATGTCCTCCGTCCCAAGTACCGTTATCTGCGTAGAACTATGGTTCGCCCTTTGAAGGATCTCATTGAGTTTCCAAGGTTTTTCAGCTATTCTCTAGATGACCGAATAATTCCAAGGCACAAGGCTCTTGTGGAGAACCGGGTAAATTTTAAACTGCGCTACATGTTGGCAATCTCTGATGAAGAGTTTGCTCGAAGGGTTGAAGCTGCAGTGGAAAGGCGTAGTAGATTTGAATCCGGTCTCATGAGTAGCACTCTCTCTGATTCCCAAACAACTAATGACTCTTTGGAAAACCGGACATTAGTAGATTTTTGTGGCAGAGAGGTTGCTTTTTCTGAGTGTCAAACAAGCGAAAACCAAGTTAGTTCTTCAAAAAATGAGGATGCTCAAAGCTTTTCTTCAGAATAA 1581 42.76 MIMRALEIRRNVTVEIFKEAMRKGKFGITYSNNLVSRLPDFIDYVMIEAASMKQLPEFSHSTFNTRAKTVIHDSNVVPLIRWLKHNSLSYPRIGKLICMSMGNLETIRGLVEWLKTIHVRGEFLGFVIMKAGGDILERSIEELDDIVRYLENNGVRRDWMGNVMSRCPQLLSYSIEEVKTRVGFYLDMGMNEKDFGTMVFDYPKALGYFTLEEMNEKVSYLKEFGLNNEDVGRLLAFKPQLMGCSIEERWKPFVKYLYYLGVCREGMRRMLIIKPMVFCVDLEKTIVPKVRFFQDIGIRDDAIGNMLVKFPPLLTYSLYKKIRPVVIFLITKAGVSRKDIAKVIALGPELLGCSIVHKLEVNVKYFLSLGIPLQILGEMIADFPMLLRYNIDVLRPKYRYLRRTMVRPLKDLIEFPRFFSYSLDDRIIPRHKALVENRVNFKLRYMLAISDEEFARRVEAAVERRSRFESGLMSSTLSDSQTTNDSLENRTLVDFCGREVAFSECQTSENQVSSSKNEDAQSFSSE* 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5802833 5807050 - Vvi3g595 Vvi3g595 784270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g595 526 Gene3D Transcription termination factor 3, mitochondrial 223 468 IPR038538 -
Vvi3g595 526 Pfam mTERF 148 455 IPR003690 GO:0003690|GO:0006355
Vvi3g595 526 Pfam mTERF 106 186 IPR003690 GO:0003690|GO:0006355
Vvi3g595 526 MobiDBLite consensus disorder prediction 507 526 - -
Vvi3g595 526 SMART mt_12 196 227 IPR003690 GO:0003690|GO:0006355
Vvi3g595 526 SMART mt_12 304 336 IPR003690 GO:0003690|GO:0006355
Vvi3g595 526 SMART mt_12 161 191 IPR003690 GO:0003690|GO:0006355
Vvi3g595 526 SMART mt_12 409 440 IPR003690 GO:0003690|GO:0006355
Vvi3g595 526 SMART mt_12 377 407 IPR003690 GO:0003690|GO:0006355
Vvi3g595 526 SMART mt_12 232 263 IPR003690 GO:0003690|GO:0006355
Vvi3g595 526 SMART mt_12 341 372 IPR003690 GO:0003690|GO:0006355
Vvi3g595 526 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Vvi3g595 526 PANTHER CGI-12 PROTEIN-RELATED 11 479 IPR003690 GO:0003690|GO:0006355
Vvi3g595 526 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF2, CHLOROPLASTIC 11 479 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g595 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - vvi:100852464 1026.93
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g595 . . . . . . . . . . . . . . . . Cpe15g00541 Bhi05g01232 . . . . . . Cla02g00521 Cam02g0538 Cec02g0541 Cco02g0546 Clacu02g0539 Cmu02g0534 Cre02g0866 Cone12ag1152 . . . . . . Cme01g01421 Blo04g00511 . . Bda14g00552 Bpe15g00867 . Bma03g00551 . . . . . Cma19g00667 . Car19g00510 . . . . . . . . . . . . . . . . Lsi11g01104 . Chy01g00786 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012281 1 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14672 PF02536 mTERF 8.90E-68 No_clan Vvi TR