Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g596 ATGAATGTGAGACCAAACCAAGATGCCCAAATCGTCTTTGTAGAGATGGTGAATCGGCGGAGCAGAGTTGTGACATTTGGTCTTTTGTTGGTGGTGCTGTTGTTGTTGGTTGAGTCCACATTCGAACAGACTCAGGCGCGACTGAGTTCATCCGCTGAGTTTACAGCTCTGTTGGAGCTCAGATCGTCGCTGGGGCTGAGGAGCAAGGAATGGCCGATAAAGTCTGACCCTTGCTGGTTCTGGCGCGGTGTCCAATGCCGAAATGGGAGCGTCGTTGGGATCGACATTTCGGGGTTCAGGCGGACCCGACTTGGTAGTCGAAACCCAGAATTCGCTGTTGATGCGCTCGCCAATTTGACCCTTTTGGAGTCGTTTAATGCTTCAATGTTTTTGCTTCCGGGCTCGATCCCGGACTGGTTTGGTGAGCGGCTTTCGTCGCTCAAAGTGCTTGATCTCCGGTCTTGTTCTATCATTGGTCCTATTCCTTCGACTGATTTTAGGGGTTTGAAAAATTTGCAGAAAATGGCAATCAGGAAAAATTCTCTAGCTGGGTCTTTGCCGGGTAATTTGTTTCCTGCTCTAAGTCAGTTGCAACTTGTAGTTCTTAGTCAGAATGCTTTCACTGGCAATCTTCCTGATGTGCTCTGGACAATGCCCAACTTGAGTTTTCTTGATGTCTCTGGAAATAACTTTACTAGTGTTCTCCCCAACTTCAGTTTCAATGGTAATGCCACGGCATCAGTATTCAATCTTTCTCAGAATATGTTTTATGGAGGTCTTCCATCTCTGCCTAGGAGGTTCAGTTCTATTGATATGTCTCAAAATTATTTTGAGGGAAGGGGTGGTACAAGCCAAAGAGGGAACGGTGTGGGGCCTGTTCCTGCTGGAGGTAGTCCTCCACCTCCGGGGATGCCTATTAACTTTTCGAGTCTTGGAGAAGCATTTACATATCAGCAGATACTCCAAGCAACTGGTGACTTCAGTGATGCGAACTTCATCAAACACGGACACTCTGGGGATCTCTACTGGGGCATTTTGGAAGGTGGGGTCCGCATAGTCATCAAAAGAATTGATTTGAGCTCAATCAAGAAAGAAACATACTTATTAGAGTTAGATTTTTTCAGCAAGGTTTCTCATACAAGATTTGTCCCCCTCCTGGGACAGTGCTTGGAGAATGATAATGAAAAGTTCCTGGTTTACAAATATATGCCAAATGGGGACTTGTCAAATTCCTTGTTCAGAAAAACCAATTTAGAGGATGATGGTTTACAGTCATTGGATTGGATAACGAGACTGAAAATTGCAATTGGAGCTGCAGAGGCTTTATCTCATCTGCATCACGAATGTAATCCGCCCCTTGTTCACAGAGATGTTCAAGCAAGCAGTATACTGCTTGATGATAAATTTGAAGTGCGTTTAGGAAGCCTGAGTGAGGTTTGCTCTCAAGAAGGGGATACTCATCAAAACGTGATTACCAGGTTTCTGCGGTTACCACAGACATCTGAACAAGGCCCTTCTGGTTCACCATCAGCAACATGTGCCTATGATGTTTACTGCTTTGGGAAGGTGTTACTTGAGCTAGTAACAGGTAGGCTGGGAATTAGCGCGTCCAATGATGCCCAGGTGAAGGAATGGTTAGATCAAACGCTACCTTGCATCAGTATATATGACAAGGAACTTGTTCAGAAGATTGTGGACCCTTCTTTGATTATAGATGAGGATCTGTTAGAGGAAGTGTGGGCCATGGCCATTGTTGCCAGATCTTGCCTCAATCCCAAGATTTCAAGGCGGCCCCTCATGAGGTACATTCTTAAAGCTTTGGAAAACCCTCTGAAGGTAGTAAGGGAAGAAAACTCCAGTTCTGCGAGGCTTAAGACAACCTCTTCTAGAGGGTCTTGGAATGCTGCTCTATTTGGTAGCTGGCGTCACAGCTCATTGGATGTGGCGGCTAATCCAGTGGCAGCCTCCACCCATAGAATAGAGGGAACCAGTAGCTTAAAACAGTCAGGAACCACAGGTTCTCAAGGAAGTGGCCAAAATGGTGGGGGTGACCATTCCTCCTCCCAAAGAAGACATTCCAAGGAGGTATTCCCCGAACCTTCTAGCATGCAAAACGTAGAGAGACATGACGAGAACTAG 2139 46.0 MNVRPNQDAQIVFVEMVNRRSRVVTFGLLLVVLLLLVESTFEQTQARLSSSAEFTALLELRSSLGLRSKEWPIKSDPCWFWRGVQCRNGSVVGIDISGFRRTRLGSRNPEFAVDALANLTLLESFNASMFLLPGSIPDWFGERLSSLKVLDLRSCSIIGPIPSTDFRGLKNLQKMAIRKNSLAGSLPGNLFPALSQLQLVVLSQNAFTGNLPDVLWTMPNLSFLDVSGNNFTSVLPNFSFNGNATASVFNLSQNMFYGGLPSLPRRFSSIDMSQNYFEGRGGTSQRGNGVGPVPAGGSPPPPGMPINFSSLGEAFTYQQILQATGDFSDANFIKHGHSGDLYWGILEGGVRIVIKRIDLSSIKKETYLLELDFFSKVSHTRFVPLLGQCLENDNEKFLVYKYMPNGDLSNSLFRKTNLEDDGLQSLDWITRLKIAIGAAEALSHLHHECNPPLVHRDVQASSILLDDKFEVRLGSLSEVCSQEGDTHQNVITRFLRLPQTSEQGPSGSPSATCAYDVYCFGKVLLELVTGRLGISASNDAQVKEWLDQTLPCISIYDKELVQKIVDPSLIIDEDLLEEVWAMAIVARSCLNPKISRRPLMRYILKALENPLKVVREENSSSARLKTTSSRGSWNAALFGSWRHSSLDVAANPVAASTHRIEGTSSLKQSGTTGSQGSGQNGGGDHSSSQRRHSKEVFPEPSSMQNVERHDEN* 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5808409 5815024 - Vvi3g596 Vvi3g596 784271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g596 712 PANTHER OS01G0253100 PROTEIN 280 698 IPR045271 GO:0004714|GO:0006468
Vvi3g596 712 PANTHER OS01G0253100 PROTEIN 22 263 IPR045271 GO:0004714|GO:0006468
Vvi3g596 712 Gene3D Ribonuclease Inhibitor 48 289 IPR032675 -
Vvi3g596 712 SUPERFAMILY Protein kinase-like (PK-like) 302 607 IPR011009 -
Vvi3g596 712 MobiDBLite consensus disorder prediction 661 712 - -
Vvi3g596 712 ProSiteProfiles Protein kinase domain profile. 327 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g596 712 Pfam Protein tyrosine and serine/threonine kinase 334 547 IPR001245 GO:0004672|GO:0006468
Vvi3g596 712 Gene3D Phosphorylase Kinase; domain 1 306 402 - -
Vvi3g596 712 Pfam Leucine rich repeat 171 231 IPR001611 GO:0005515
Vvi3g596 712 Gene3D Transferase(Phosphotransferase) domain 1 403 630 - -
Vvi3g596 712 PANTHER OS03G0724300 PROTEIN 280 698 - -
Vvi3g596 712 PANTHER OS03G0724300 PROTEIN 22 263 - -
Vvi3g596 712 MobiDBLite consensus disorder prediction 661 686 - -
Vvi3g596 712 SUPERFAMILY L domain-like 74 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g596 - - - vvi:100853635 811.216
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g596 Vvi18g947 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g596 . . Bda06g00940 . . Bpe12g00262 . . Cmo19g00681 . Cma02g00401 Cma20g00853 Car02g00262 Car20g00736 . Cpe04g00119 Cpe15g00542 Bhi05g01234 . . . . . . Cla02g00520 Cam02g0533 Cec02g0535 Cco02g0543 Clacu02g0533 Cmu02g0528 Cre02g0860 Cone12ag1153 Cone8ag1202 . Cone10ag1173 Lsi10g00365 . Chy11g00382 Cme01g01414 . . Bda15g00008 Bda14g00553 . . . Bma08g00556 . Cmo02g00407 Cmo20g00862 . Cma19g00668 . Car19g00511 . Cpe05g01256 Bhi10g02017 . . . . . . . . . . . . . Lsi11g01105 Csa02g01252 Chy01g00782 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001821 3 2 2 1 2 2 4 1 1 2 2 1 4 2 1 3 1 3 4 1 2 1 2 2 2 3 1 4 1 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76576 PF07714 PK_Tyr_Ser-Thr 2.00E-16 CL0016 Vvi PK