Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g597 ATGGCTTCTGCAGAGATCGAGTACCGATGCTTCGTCGGAGGGCTCGCTTGGGCCACCGACGACCAGTCCCTCGAGAGGGCTTTCAGTCAATTTGGCGAGATTCTTGAATCGAAGATCATCAATGATCGTGAGACTGGGAGGTCCAGGGGCTTCGGATTCGTTACGTTCAGTAGCGAGCAGTCGATGAGGGACGCCATCGAGGGGATGAACGGCCAGAATCTTGATGGTCGTAACATAACCGTAAACGAAGCTCAGTCCCGCGGCGGCGGCGGTTATGGCGGTGGTAGTCGCGACCGTGGTTACGGAGACGGTGGATCTCGCTACTCTAGGAGTGGTGGTGCTTCGGATGGCAACTGGAGGAACTAG 366 56.83 MASAEIEYRCFVGGLAWATDDQSLERAFSQFGEILESKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMNGQNLDGRNITVNEAQSRGGGGYGGGSRDRGYGDGGSRYSRSGGASDGNWRN* 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5832903 5834101 + Vvi3g597 Vvi3g597 784272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g597 121 MobiDBLite consensus disorder prediction 69 121 - -
Vvi3g597 121 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Vvi3g597 121 Gene3D - 2 119 IPR012677 -
Vvi3g597 121 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 7-RELATED 1 120 - -
Vvi3g597 121 MobiDBLite consensus disorder prediction 69 85 - -
Vvi3g597 121 SMART rrm1_1 9 82 IPR000504 GO:0003723
Vvi3g597 121 SUPERFAMILY RNA-binding domain, RBD 8 115 IPR035979 GO:0003676
Vvi3g597 121 PANTHER GEO13361P1-RELATED 1 120 - -
Vvi3g597 121 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g597 - - K13195 vvi:100853676 171.785
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g597 . . . . . Bpe12g00080 . . . . Cma02g00400 Cma20g00852 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00366 . Chy11g00381 . Blo04g00512 Blo13g00553 Bda15g00006 Bda14g00554 Bpe15g00866 . Bma03g00552 . Sed01g0304 Cmo02g00405 Cmo20g00861 . . . . . Cpe05g01257 Bhi10g02015 Tan05g1313 Cmetu11g0750 . Hepe08g1018 . . . . . . . . . . Csa02g01253 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004876 2 1 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 2 0 1 1 1 3 1 1 38