Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g6 ATGGGGAAGAAGAACAAAACGGAGGGTGGCGGAGCAAGAGATCAACACTGCCCTTCGACTGTGTTCGTCTCCAACTTTCCTTACTCATTCACCAACTCTCAGCTCGAAGAAACATTCAGTGATGTTGGACCGATTAGGCGCTGTTTCATGGTCACACAGAAGGGGTCAACCGAACACCGGGGATTTGGTTTTGTTCAATTTGCTGTTAAAGAAGATGCTAACCGGGCTATTGAACTGAAAAATGGTTCATCTATTGGTGGTCGGAAAATCGGAGTTAAGCTTGCCATGCACCGTACTCCCCTTGAACAGCGTCGATCCAAGGAAAATCAAGATGATATCATTAAGACAAGAACGGAAAAGGATAGTTCTTCTGAGGTGGTCAAGCAGGGACATGCTTCAGACTTACAGGAAATAGAGAAACATGTGGAACTCAGAAAAGCACTGAAACCTTGCACTGATCAAGCTGATAAAGGGAGCTTTTCAGAAAAGCAGAGGGTTGCTCGGACTGTCATATTTGGTGGACTTCTTAATGCTGATATGGCAGAGGTTGTTCACCTCCGAGCCAGAGAGGTTGGCACTGTCTGTTCTGTAACTTATCCTCTTCCAAAAGAAGAGCTTGAACACCATGGTCTCTCTCAAGATGGATGCAAAATCGATGCCTCAGCTGTGCTTTATTCAAGTGTCAAAGAGGCACATGCTTCTGTTGCGATGTTACATCAAAAAGAGATAAAGGGAGGAATTGTTTGGGCACGTCAACTGGGTGGGGAGGGCTCCAAGACTCAAAAATGGAAACTCATAGTTAGAAATCTTCCTTTCAAGGCTAAAGTGACCGAGATAAAAGATATTTTTTCATCTGCTGGGTTTGTATGGGATGCATTTATTCCACAGAATTCTGAGACAGGGTTATCTAGAGGTTTTGCATTTGTTAAGTTCACAAGCAAGCAAGATGCAGAAAATGCAATCCAGAAGTTCAATGGGGAAAAAATTGGTAAAAGACCCATAGCTGTTGACTGGGCTGTTCCAAAGAAAATTTATATCACTGGTGCTAATCCTGTTGTTGCATCAGAAGATGGACAACTGAATGGGAGAGATGGGGAAGGTGATACTGATAGTGATGATTTGGAGGATGACACTACAGATATTGATAATAAAGTACCACACCCTCAAGGGGTTGGTAGTGCTCCAGATGACTCCAATACAACAGAGAAAGAAGTAATGCCTACTGAATTTGATTTTAATGAAGAAGCAGACATTGCAAGGAAGGTTTTAAAGAACTTGATCACATCCTCTGCTAAAGGAACACTTCCTTCTTCCAGTGGTGGACCCACGGACCTAAATTTTGATGAAACCATTGACGTACTGAAAAAAACATCCAATGAATCTGAAAAAGCATCAGATGTAACTGAACCTGAAAACTCTAGCAAAAGCAAATTATTAAATCTTAGACCAATAGAGTCAGAAGATGATTTGCAGAGAACAATTTTCATAAGCAACCTGCCTTTTGATATTGACAAGGAAGAAGTTAAGCAACAATTTTCCAAATTTGGTGAAGTGCAATCCTTTGTCCCTGTTCTCCATCAAGTAACCAAGCGACCAAAAGGAACAGGGTTTCTTAAGTTCAATACAGTAGCTGCAGCTGATGCTGCAGTATCAGCAGCAAACCCCACATCTTCTTTGGGGATTTTCCTGAAGGGCAGGCAATTGACAGCTTTGAAGGCTTTGGACAAGAAATCAGCTCATGATAAGGAATTGAAGAAGAGCAAACCTGAGGAACGTGATCACCGCAATCTTTACCTGGCTAAGGAAGGTCTCATTGTTGAAGGGACTCCAGCTGCTGAAGGTGTTTCAGCTAGTGACATGTCAAAGCGCCATATGTTGGCAAGACAAAAAGATACAAAATTAGAATCTCCAAATTTTCATGTTTCAAGGACTAGACTTATCATATACAATTTGCCCAAGTCAATGACAGAAAAAGAAGTTAAAAAGCTTTGTATAGATGCAGTTACCTCACGTGCTACCAAGCAAAAACCCATGATTAAACAGATAAAGTTTCTGAAGGATATGAAGAAAGGAAAAGTAGTCACAAAGAACCATTCACGAGGAGTTGCTTTCATTGAGTTTACAGAGCATCAACATGCACTTGTAGCCCTGAGAGTTCTTAACAACAATCCTGAAACTTTTGGTCCTGAACATCGCCCAATTGTGGAGTTTGCTCTTGATAATATCCAAACATTGAGGCAAAGGAGGGCTAAGCTGGAGGCTTACCAGCAGATTAACCATGGCTATCCAGAGGACTTGCAGCCAAATGATGACCCCAACACACCAGAAGCCAGCCCAAACAAGAAGATGAAATCAAGAAAACGTAAGTCCAGGGATAATGATGGACCATTGAAGACTTCAGAACCCAATGAAGGAGATGAACCAGAAGATAAGGTAATCAAAGGAGCTCCTGATGATGAAAAACCCTTAAAAGCAGAAAGCACAATCAGCAAAGCCCGCAATTCAAAGTCTTCAGAGGAATCAAATATGCTACCAAAAAAGAGGAAGCTGCAAGAGCATATAGCAGTACAAGAAGGGAAAAGCCCGAAACAAAAAACAAGGACCCGAAGGAGTAAAGATCCATCAGGGCAGGTCATACTTGATAAGTTGGACATGCTGGTGGAACAATATAGAGCTAAATTTTCACAGCAGACTGATGACAAAACTGATGGCCAAAAACAAGGTTCCAGACAGCTTAAGAGATGGTTCCAGTCATAA 2757 41.78 MGKKNKTEGGGARDQHCPSTVFVSNFPYSFTNSQLEETFSDVGPIRRCFMVTQKGSTEHRGFGFVQFAVKEDANRAIELKNGSSIGGRKIGVKLAMHRTPLEQRRSKENQDDIIKTRTEKDSSSEVVKQGHASDLQEIEKHVELRKALKPCTDQADKGSFSEKQRVARTVIFGGLLNADMAEVVHLRAREVGTVCSVTYPLPKEELEHHGLSQDGCKIDASAVLYSSVKEAHASVAMLHQKEIKGGIVWARQLGGEGSKTQKWKLIVRNLPFKAKVTEIKDIFSSAGFVWDAFIPQNSETGLSRGFAFVKFTSKQDAENAIQKFNGEKIGKRPIAVDWAVPKKIYITGANPVVASEDGQLNGRDGEGDTDSDDLEDDTTDIDNKVPHPQGVGSAPDDSNTTEKEVMPTEFDFNEEADIARKVLKNLITSSAKGTLPSSSGGPTDLNFDETIDVLKKTSNESEKASDVTEPENSSKSKLLNLRPIESEDDLQRTIFISNLPFDIDKEEVKQQFSKFGEVQSFVPVLHQVTKRPKGTGFLKFNTVAAADAAVSAANPTSSLGIFLKGRQLTALKALDKKSAHDKELKKSKPEERDHRNLYLAKEGLIVEGTPAAEGVSASDMSKRHMLARQKDTKLESPNFHVSRTRLIIYNLPKSMTEKEVKKLCIDAVTSRATKQKPMIKQIKFLKDMKKGKVVTKNHSRGVAFIEFTEHQHALVALRVLNNNPETFGPEHRPIVEFALDNIQTLRQRRAKLEAYQQINHGYPEDLQPNDDPNTPEASPNKKMKSRKRKSRDNDGPLKTSEPNEGDEPEDKVIKGAPDDEKPLKAESTISKARNSKSSEESNMLPKKRKLQEHIAVQEGKSPKQKTRTRRSKDPSGQVILDKLDMLVEQYRAKFSQQTDDKTDGQKQGSRQLKRWFQS* 919
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 78494 94105 + Vvi3g6 Vvi3g6 783681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g6 918 Gene3D - 448 589 IPR012677 -
Vvi3g6 918 Gene3D - 2 111 IPR012677 -
Vvi3g6 918 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 13 378 - -
Vvi3g6 918 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 491 753 - -
Vvi3g6 918 SUPERFAMILY RNA-binding domain, RBD 492 722 IPR035979 GO:0003676
Vvi3g6 918 MobiDBLite consensus disorder prediction 760 878 - -
Vvi3g6 918 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 341 IPR000504 GO:0003723
Vvi3g6 918 Coils Coil 735 755 - -
Vvi3g6 918 MobiDBLite consensus disorder prediction 103 132 - -
Vvi3g6 918 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 97 IPR000504 GO:0003723
Vvi3g6 918 SUPERFAMILY RNA-binding domain, RBD 19 249 IPR035979 GO:0003676
Vvi3g6 918 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 492 591 IPR000504 GO:0003723
Vvi3g6 918 MobiDBLite consensus disorder prediction 355 412 - -
Vvi3g6 918 MobiDBLite consensus disorder prediction 894 908 - -
Vvi3g6 918 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 644 757 IPR000504 GO:0003723
Vvi3g6 918 CDD RRM3_RBM28_like 492 573 - -
Vvi3g6 918 CDD RRM1_RBM28_like 20 98 - -
Vvi3g6 918 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 494 554 IPR000504 GO:0003723
Vvi3g6 918 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 334 IPR000504 GO:0003723
Vvi3g6 918 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 90 IPR000504 GO:0003723
Vvi3g6 918 Gene3D - 643 738 IPR012677 -
Vvi3g6 918 CDD RRM2_RBM28_like 264 340 - -
Vvi3g6 918 PANTHER RNA BINDING PROTEIN 13 378 - -
Vvi3g6 918 PANTHER RNA BINDING PROTEIN 491 753 - -
Vvi3g6 918 SUPERFAMILY RNA-binding domain, RBD 259 355 IPR035979 GO:0003676
Vvi3g6 918 MobiDBLite consensus disorder prediction 457 476 - -
Vvi3g6 918 CDD RRM4_RBM28_like 644 741 - -
Vvi3g6 918 MobiDBLite consensus disorder prediction 840 877 - -
Vvi3g6 918 SMART rrm1_1 493 571 IPR000504 GO:0003723
Vvi3g6 918 SMART rrm1_1 20 93 IPR000504 GO:0003723
Vvi3g6 918 SMART rrm1_1 264 337 IPR000504 GO:0003723
Vvi3g6 918 SMART rrm1_1 645 736 IPR000504 GO:0003723
Vvi3g6 918 MobiDBLite consensus disorder prediction 891 918 - -
Vvi3g6 918 Gene3D - 250 377 IPR012677 -
Vvi3g6 918 MobiDBLite consensus disorder prediction 789 827 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g6 K14573 NOP4, RBM28; nucleolar protein 4 - vvi:100257200 1749.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g6 . . . Bda08g00947 . . Bma05g00433 . . . . . . . . . Cpe15g00552 . . . . . . . . . . . . . . . . Cone3ag1223 Cone10ag1108 . Csa07g00016 . Cme01g01366 . . . . . Bpe05g00327 . . . . . . . . Car19g00524 . . . . . . . . . . . . . . . . Lsi11g01124 . Chy01g00761 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009278 1 1 1 3 1 1 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34