Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g60 ATGCTTCTCACCGATAAGGTTTTGCAGTTCGCTGTTCTTCCGGAGGCGGCTCTCGGCGCCGATCGCTATCTCTCCTCTCTCACCACTATCAGCGATGTCGAAGTCTCCGCTGATTTGCAGGTGGTTAAAGTTTATGTATCTGTTTTTGGGGATGAGAAAGGAAAGGAGGTCGCCATTGCTGGTTTGAAGTCAAAGGCTAAATACGTTCGAAGTGAGTTGGGGAGGCGTATGAAGCTGCGGCTAACTCCAGAGATACGCTTCGTAGAGGATGAGTCTCTAGAGCGAGGAAGCAGGGTGATTGCAATATTGGATAGGATAAAGAATGAGAAAAAGATGGCAGGAAGCCAGGATCAACCATCCGAATCATCTGATCTACCTCAAGATGATGACTGGGAGGGTGATGGTGATGACCCTGATGAAAACATTATTTATATAAAATAG 441 46.71 MLLTDKVLQFAVLPEAALGADRYLSSLTTISDVEVSADLQVVKVYVSVFGDEKGKEVAIAGLKSKAKYVRSELGRRMKLRLTPEIRFVEDESLERGSRVIAILDRIKNEKKMAGSQDQPSESSDLPQDDDWEGDGDDPDENIIYIK* 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 714368 721528 - Vvi3g60 Vvi3g60 783735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g60 146 Gene3D - 7 112 IPR015946 -
Vvi3g60 146 PANTHER RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED 1 146 IPR000238 GO:0006364
Vvi3g60 146 ProSitePatterns Ribosome-binding factor A signature. 69 90 IPR020053 GO:0006364
Vvi3g60 146 MobiDBLite consensus disorder prediction 110 146 - -
Vvi3g60 146 Hamap Ribosome-binding factor A [rbfA]. 2 103 IPR000238 GO:0006364
Vvi3g60 146 Pfam Ribosome-binding factor A 21 102 IPR000238 GO:0006364
Vvi3g60 146 MobiDBLite consensus disorder prediction 123 138 - -
Vvi3g60 146 SUPERFAMILY Ribosome-binding factor A, RbfA 21 106 IPR023799 -
Vvi3g60 146 TIGRFAM rbfA: ribosome-binding factor A 26 108 IPR000238 GO:0006364
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g60 K02834 rbfA; ribosome-binding factor A - vvi:100267621 275.404
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g60 . . . . . . . . . . Cma02g00357 . Car02g00224 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00426 . Chy11g00326 . . . . . . . . . Sed01g0251 Cmo02g00359 . . . . . . Cpe05g01299 Bhi10g01928 Tan05g1227 Cmetu11g1309 . Hepe08g0963 . . . . . . . . . . Csa02g01320 . Cme11g00451
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010825 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 31