Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g601 ATGGTGAACATCGTTACACTGCAGAAGTCCCTTGTCCAAATCCTCATGAAGTTCAACGGAGTTGAACCCAAAAAGGTGGAGATCGAGCCAGGAACCGTCATGAACTTCTGGGCCCCCGCCAAACAAAAAAATGAAGAAACCCAGAAGCCGAATGTGGTTCTTGTTCATGGCTTCGGTGTGGATGGGATACTAACGTGGATGTTCCAAGTTCTTGCTCTCAAAAGCCATTATTCAGTCTACGTGCCGGACCTCCTCTTCTTCGGGGACTCCGCCACCGCCGCCGGGAACAGGTCGCCGAGGTTCCAGGCGGAGTGTCTGGCAACTGGGTTGAGGAAGCTTGGGGTGGAGAGGTGTGTGGTGGTGGGGTTGAGCTACGGAGGCATGATTGGGTTCAAGATGGCTGAACTGTACCCAGATTTGGTGGAGTCAATGGTGGTGAGCGGGTCGGTGGAGGCCTTGACGGAGTCGCTCAGCAATCGGAGGCTGAAGAGGCTAGGGTTCCGGCGGTGGTCGGAGTGTTTGATGCCGACCACTGTGGAAGGCGTGAAGGAGATGTTCAGAGTCGGTACTCACTGGTTACCGCCATGGATTCCCAATTGGATTTTCAAGGACTATCTTGAGGTGATGTTCAGCCACAGAAAGGAGAGAGAAGAACTTCTGGAAGCTTTGGTCATCAGGGACGAGGACTTCACACCGTACCACTACCACCAGAGGATATATCTGCTATGGGGCGATGGTGACAAGCTTTTTGACTTGGAAGTGGCACACAACTTGAAAGAACAATTGGGAGACAAAGCGAAGCTGCAATGCATAGAGAAGGCAGGCCATCTATCTCAATTCGAGAGGCCTTGTGCCTACAACGCCCACCTCAAGCGGATTCTGGCCTCTTTGACAGCATATGAGCAGCTGCAATAA 915 52.46 MVNIVTLQKSLVQILMKFNGVEPKKVEIEPGTVMNFWAPAKQKNEETQKPNVVLVHGFGVDGILTWMFQVLALKSHYSVYVPDLLFFGDSATAAGNRSPRFQAECLATGLRKLGVERCVVVGLSYGGMIGFKMAELYPDLVESMVVSGSVEALTESLSNRRLKRLGFRRWSECLMPTTVEGVKEMFRVGTHWLPPWIPNWIFKDYLEVMFSHRKEREELLEALVIRDEDFTPYHYHQRIYLLWGDGDKLFDLEVAHNLKEQLGDKAKLQCIEKAGHLSQFERPCAYNAHLKRILASLTAYEQLQ* 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5885526 5887512 + Vvi3g601 Vvi3g601 784276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g601 304 Pfam alpha/beta hydrolase fold 50 155 IPR000073 -
Vvi3g601 304 SUPERFAMILY alpha/beta-Hydrolases 17 293 IPR029058 -
Vvi3g601 304 Gene3D alpha/beta hydrolase 5 299 IPR029058 -
Vvi3g601 304 PRINTS Epoxide hydrolase signature 76 91 IPR000639 GO:0003824
Vvi3g601 304 PRINTS Epoxide hydrolase signature 120 133 IPR000639 GO:0003824
Vvi3g601 304 PRINTS Epoxide hydrolase signature 134 147 IPR000639 GO:0003824
Vvi3g601 304 PRINTS Epoxide hydrolase signature 271 293 IPR000639 GO:0003824
Vvi3g601 304 PRINTS Alpha/beta hydrolase fold signature 76 91 IPR000073 -
Vvi3g601 304 PRINTS Alpha/beta hydrolase fold signature 120 133 IPR000073 -
Vvi3g601 304 PRINTS Alpha/beta hydrolase fold signature 134 147 IPR000073 -
Vvi3g601 304 PRINTS Alpha/beta hydrolase fold signature 239 253 IPR000073 -
Vvi3g601 304 PANTHER EPOXIDE HYDROLASE 4-LIKE 2 294 - -
Vvi3g601 304 PANTHER SI:DKEY-122A22.2 2 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g601 - - - vvi:100853904 622.468
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g601 Vvi4g977 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g601 . . Bda06g00935 . . . . Bma12g00515 . . . . Car02g00258 . . . . . . . . . . . . . . . . . . . . . Cone10ag0964 Lsi10g00369 . . . . . . . . . . . Sed05g3619 Cmo02g00401 . . . . . . Cpe05g01261 Bhi10g02010 Tan05g1308 Cmetu07g0234 . Hepe08g1015 . . . . . . . . . . Csa02g01258 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002258 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 1 2 2 3 2 2 2 5 2 63