Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g602 ATGAGGACATTGTGTCTCACAAGATTATGGGGTTGGGCTAAACAAACTCTTACACTAAAACAATTGGGAGAGAAAGCGAAACTGCAATACATAGAGAAGGCAGGCCACCTAGCTCAATCAGAGAGGCCTTGTGTATACAACGCGCACCTCAAGCAGATTCTAGCCTCTTTAACAACAGATAAGCAGTTAAAGAGAGATGGGTCTGGTTTCTCTCTCAACTCAGACTCAGTCTCAGTTTCAGGCTCTCTGATGGGTGAGCAAACCCAAACCCAAACTACTCAGCCACCCTCTTCTTTACCCGAGAATCCATCGCCGGCGAAGTCCCGGAAGCTGTCCTCTCACTCTTCTCCACGGACGGCGGCCATTTTGCTGCCAATTACGAGACTGTTGTCTTCTGATGATGTTGTCGCTGCCGCTCTCCGCCACCTGAGAAGCTCCGACCCGGTTCTTGCTCCGGTGATAGATGCGTATGAGCCACCGAAATTCGAGAATTCGGACACTCCGTTTCTGGCTTTAGCGAAGAGCATTTTATACCAGCAAATTACGCACAAGGCTGGCACCACCATTTACAACCGCTTTGTGTCGCTCTGCGGCGGGGAGACTAGGGTTTGTCCAATCTCGGTTCTGGCGCTGACCCCTCCGCAGCTTCTTCAAATTGGGGTTTCGGCTCGGAAAGTGAGCTTCTTGCACGACCTTGCGAACAAGTATCGGACCGGAATTTTATCGGATTCGAAGATTTTGACGATGGAAGATAGGGCTTTGGTTTCATTGATAGCGATGGTGAAGGGTTTTGGCGTGTTGTCCGTACACATGTTCATGATCTTCTCTCTTCACCGCCCCGATGTGCTTCCGGTGGGCGACGCTAATCTCCGAAAAGGGGTTCAAATGCTCTACGGTCTTGAAGAATTGCCGCGGCCTTCGCAGATGGAGAAGCTCTGCGAGCGGTGGAGGCCTTATAGGTCTGTTGCTTCTTGGTATATATGGAGACTAAGTGAGGCCAATGGAGTTCAGGGCAAGGCTGAATCCGGAGAAACTGTGTTGGTGTTTTATGCTTCCCTGTATAATGCTGAATGTTTCAGTGTATTAGGCCTTTAG 1095 49.95 MRTLCLTRLWGWAKQTLTLKQLGEKAKLQYIEKAGHLAQSERPCVYNAHLKQILASLTTDKQLKRDGSGFSLNSDSVSVSGSLMGEQTQTQTTQPPSSLPENPSPAKSRKLSSHSSPRTAAILLPITRLLSSDDVVAAALRHLRSSDPVLAPVIDAYEPPKFENSDTPFLALAKSILYQQITHKAGTTIYNRFVSLCGGETRVCPISVLALTPPQLLQIGVSARKVSFLHDLANKYRTGILSDSKILTMEDRALVSLIAMVKGFGVLSVHMFMIFSLHRPDVLPVGDANLRKGVQMLYGLEELPRPSQMEKLCERWRPYRSVASWYIWRLSEANGVQGKAESGETVLVFYASLYNAECFSVLGL* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5887914 5897060 + Vvi3g602 Vvi3g602 784277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g602 364 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 97 338 - -
Vvi3g602 364 Gene3D Hypothetical protein; domain 2 166 279 - -
Vvi3g602 364 SMART endo3end 177 332 IPR003265 GO:0006284
Vvi3g602 364 MobiDBLite consensus disorder prediction 77 116 - -
Vvi3g602 364 PANTHER DNA GLYCOSYLASE SUPERFAMILY PROTEIN-RELATED 97 338 - -
Vvi3g602 364 SUPERFAMILY DNA-glycosylase 158 330 IPR011257 GO:0003824|GO:0006281
Vvi3g602 364 Gene3D - 141 329 - -
Vvi3g602 364 Pfam HhH-GPD superfamily base excision DNA repair protein 174 318 IPR003265 GO:0006284
Vvi3g602 364 CDD ENDO3c 169 331 IPR003265 GO:0006284
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g602 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] - vvi:100852509 511.531
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g602 Vvi4g979 ECH
Vvi3g602 Vvi18g952 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g602 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011094 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 31