Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g603 ATGGCATCAGGGTCTCGCATGGGCTCTGGCTTATGGACTTCAAAGCAAAACAAACTGTTTGAAAAGGCTCTAGCCTTGTATGACAAGGACACCCCAGACCGTTGGCAGAATGTAGCCAAGGCTGTGGGTGGGAAGTCTGCCGAGGAAGTGAAGAGACACTATGAGATCCTCATTGAGGACCTCAAACATATCGAATCGGGCCATGTTCCGATTCCTAATTACAAGTCCACTGGAAGCAACAGCATTGGTGATCAAGAACAGAGGCTGCTGAAGTGTATAAAGCTGCAATAA 291 47.77 MASGSRMGSGLWTSKQNKLFEKALALYDKDTPDRWQNVAKAVGGKSAEEVKRHYEILIEDLKHIESGHVPIPNYKSTGSNSIGDQEQRLLKCIKLQ* 97
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5902158 5903523 - Vvi3g603 Vvi3g603 784278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g603 96 PANTHER PROTEIN RADIALIS-LIKE 3 7 77 - -
Vvi3g603 96 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Vvi3g603 96 Gene3D - 3 71 - -
Vvi3g603 96 ProSiteProfiles SANT domain profile. 12 62 IPR017884 -
Vvi3g603 96 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Vvi3g603 96 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Vvi3g603 96 CDD SANT 12 54 IPR001005 -
Vvi3g603 96 SMART sant 8 60 IPR001005 -
Vvi3g603 96 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 7 77 IPR044636 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g603 - - - vvi:100853961 197.593
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g603 Vvi18g955 ECH
Vvi3g603 Vvi4g983 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g603 . . Bda06g00933 . . . . Bma12g00512 Cmo19g00684 . . . . . . Cpe04g00117 Cpe15g00548 Bhi05g01236 Tan02g0793 Cmetu01g1593 . Hepe02g0502 . . Cla02g00512 Cam02g0522 Cec02g0526 Cco02g0533 Clacu02g0524 Cmu02g0521 Cre02g0854 . . . . . . . Cme01g01408 . Blo13g00551 . . . . . . . . . . Cma19g00673 . Car19g00514 . . . . . . . . . . . . . . . . Lsi11g01111 . Chy01g00779 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000218 6 6 3 6 4 5 7 4 5 6 5 5 7 7 7 9 5 4 8 4 6 3 11 1 3 6 7 11 9 3 173
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14673 PF00249 Myb_DNA-binding 5.30E-06 CL0123 Vvi TF