Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g605 ATGGCGGTGTACGAGGCGTGGCTGGTGAAGCATGGGAAGTCGTACAACGCGTTGGGGGAGAGAGAGAGGCGTTTTGAGATTTTCAAGGATAATCTCAGGTTCATTGAGGAGCATAACGCTGTGAACCGGACTTACAAGGTTGGCGATCGGTATTCCTTTCGGGCCGGCGAAGACTTGCCGGAGTCGGTGGACTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAATAGCAACGGGGGATCTGATCTCTCTATCAGAGCAGGAGCTGGTGGATTGTGATAAGTCATACAACCAAGGATGCAATGGAGGTCTCATGGACTATGCTTTTGAATTCATCATCAACAATGGTGGCATTGATAGCGAAGAAGATTACCCTTACCGGGCGGCTGATACAACCTGTGATCCTAACCGGAAAAATGCTCGGGTTGTGTCCATTGATGGATATGAAGATGTTCCACAAAACGATGAGAGATCCTTGAAGAAAGCTGTGGCAAATCAACCAGTTAGTGTTGCCATCGAAGCCGGTGGCAGGGCTTTCCAACTCTACCAGTCAGGTGTATTTACCGGTCAGTGCGGGACACAATTGGATCATGGTGTAGTTGCTGTGGGATATGGTACAGAAAATAGTGTGGACTACTGGATTGTTAGGAACTCATGGGGCCCTAACTGGGGGGAGAGTGGATATATCAAGTTGGAGCGTAATTTGGCCGGCACTGAAACTGGCAAGTGCGGGATTGCAATAGAACCCTCTTACCCAATCAAGAATGGGCAGAACCCTCCTAACCCTGGTCCATCCCCTCCTTCTCCTTCCAAGCCGAGTGTAGTCTGCGATGAATACTACACATGCCCTGAGGAAAGCACATGCTGTTGTATCTATGAGTACGCTGGTTTCTGCTTTGAATGGGGATGCTGCCCTCTTGAGGGTGCCACCTGTTGTGACGACCATTACAGCTGCTGCCCTCACGAATATCCCGTCTGTGATGTTGATGCTGGAACCTGCCAAATGAGCAAGGGCAACCCATTGTCGGTAAAAGCATGGAGGCGAACCCCTGCTAGACCCGTTTTTGCTCCCCGGCCTGTTATTGAGGTCATCTAG 1161 50.73 MAVYEAWLVKHGKSYNALGERERRFEIFKDNLRFIEEHNAVNRTYKVGDRYSFRAGEDLPESVDWREKGAVVPVKDQGNCGSCWAFSTIAAVEGINQIATGDLISLSEQELVDCDKSYNQGCNGGLMDYAFEFIINNGGIDSEEDYPYRAADTTCDPNRKNARVVSIDGYEDVPQNDERSLKKAVANQPVSVAIEAGGRAFQLYQSGVFTGQCGTQLDHGVVAVGYGTENSVDYWIVRNSWGPNWGESGYIKLERNLAGTETGKCGIAIEPSYPIKNGQNPPNPGPSPPSPSKPSVVCDEYYTCPEESTCCCIYEYAGFCFEWGCCPLEGATCCDDHYSCCPHEYPVCDVDAGTCQMSKGNPLSVKAWRRTPARPVFAPRPVIEVI* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5934426 5937550 + Vvi3g605 Vvi3g605 784280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g605 386 SUPERFAMILY Cysteine proteinases 2 275 IPR038765 -
Vvi3g605 386 SMART GRAN_2 298 355 IPR000118 -
Vvi3g605 386 CDD Peptidase_C1A 60 274 IPR039417 -
Vvi3g605 386 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 77 88 IPR000169 -
Vvi3g605 386 Pfam Cathepsin propeptide inhibitor domain (I29) 4 48 IPR013201 -
Vvi3g605 386 Pfam Granulin 309 356 IPR000118 -
Vvi3g605 386 Pfam Papain family cysteine protease 59 275 IPR000668 GO:0006508|GO:0008234
Vvi3g605 386 SMART Inhibitor_I29_2 4 59 IPR013201 -
Vvi3g605 386 PANTHER CYSTEINE PROTEASE 1 48 - -
Vvi3g605 386 PANTHER CYSTEINE PROTEASE 48 304 - -
Vvi3g605 386 Gene3D Cysteine proteinases 1 277 - -
Vvi3g605 386 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 217 227 IPR025660 -
Vvi3g605 386 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 234 253 IPR025661 -
Vvi3g605 386 PRINTS Papain cysteine protease (C1) family signature 77 92 IPR000668 GO:0006508|GO:0008234
Vvi3g605 386 PRINTS Papain cysteine protease (C1) family signature 219 229 IPR000668 GO:0006508|GO:0008234
Vvi3g605 386 PRINTS Papain cysteine protease (C1) family signature 234 240 IPR000668 GO:0006508|GO:0008234
Vvi3g605 386 SUPERFAMILY Granulin repeat 296 329 - -
Vvi3g605 386 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 48 304 - -
Vvi3g605 386 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 1 48 - -
Vvi3g605 386 SMART pept_c1 59 275 IPR000668 GO:0006508|GO:0008234
Vvi3g605 386 Gene3D Granulin 294 358 IPR037277 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g605 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - vvi:100252080 771.541
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g605 Vvi18g726 ECH
Vvi3g605 Vvi7g1018 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g605 . . . . . Bpe12g00293 . . Cmo19g00605 . . . . . . Cpe04g00295 Cpe15g00476 . . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . Cone3ag0991 Cone10ag1012 Lsi03g00521 Csa07g00735 . Cme01g00073 . . Bda15g00848 Bda14g01450 . . Bma03g01355 Bma08g00518 . . . Cma11g01732 . Car11g01109 Car19g00445 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001585 7 2 1 3 5 2 3 1 2 1 1 1 2 2 2 1 0 5 4 2 2 2 2 2 2 1 2 5 3 3 71