Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g606 ATGGAGTTGGAATCTGCCGATTCATCAAATCTGCCTCCTCCTAAAGCGCCAGAAGTGCAACCTTCTGTTGCCACAGGTTCTGGACCAGATAATGCTGCACGTGATGCACCATCTAGGCTATCATCATGGGCCAAAAATTTGAAAATTCCTCAGTCATTGGCAGGGGGACAAGATGAATCTCCAACTGGAACTACTGCAAAATCAAGCTTTGCACGTTTCACTAGTGGGATTGGATTGCGCTTGTCTCCAAAAACTCCTACATCTGAAGATGGTCCTGATGGATCTCCAACAACGGCACAGCCTGGTTTATTTGGAACATTTACAAAAGGAATAGTTGACTCATCTAGGAATGCAGTGAAGGCTGTGCAGGTCAAGGCTCGTCATGTGGTCTCTCAAAATAAACGAAGATATCAGGAGGGGGGATTTGACTTGGATATGACATACATCACAGAGAATATAATTGCCATGGGGTTCCCTGCTGGTGATATGAGCTCTGGGTTTTTAGGATATGTTGAGGGTTTCTACCGAAACCATATGGAGGAAGTGATCAAGTTCTTTGAAACACATCACAAGGACAAATACAAAGTATACAATCTTTGCTCGGAGAGACTGTATGATGCATCCTTGTTTGAAGGAAAGGTGGCTAGTTTCCCATTTGATGACCATAATTGCCCCCCAATTCAACTCATAACTTTATTTTGTCAAAGTGCATACTCATGGTTGAAGGAGGATATTGAGAATGTTGTGGTTGTGCACTGTAAAGCTGGAATGGCAAGGACAGGATTAATGATTTCTAGCCTTCTTCTATTCCTGAAGTTCTTCCCTACAGCTGAGGAGTCCATTGATTACTACAACCAGAAAAGATGTTTTGATGGGAAAGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAATATTTTGAACGGATCTTAACATACTTCAACGGTGAAAACCAGCCTGGGCGCAGATGCATGCTCAGGGGATTTCGGCTTCACAGGTGCCCTTATTGGATTAGGCCCTCCATTACTGTCTCTGACCATAATGGTGTTCTCTTCTCTACCAAAAAACATCCACGAACCAAGGATCTGTCGCCAGAAGAGTTTTGGTTCAGCGCACCAAAGAAAGGGATAATGGTCTTTGCACTTCCAGGGGAGCCTGGCTTGACACCATTGGCTGGGGATTTTAAAATCCATTTTCATGACCGCCAAGGAGATTTCTACTGTTGGTTAAACACCACAATGATGGAAAACAGAAAAGTTCTAAACCCTGATGATCTTGATGGGTTTGACAAGAGGAAACTGCCATCCCCAGGATTCCAGGTCGAGGTTGTGCTGATAGACCATGATGGCTCTGTTCCACCAGCACCCAAAACTGAAACTGATGTCAAGAAATCAGATGGAGTCTCGGGTACTGGTTCTGCCTCAGTTGATGGGGCCAATGCCACTCCAAACCCAAGTAAAGACCCAGGAAGCAAGGATAAAGATGATGTGTTTTCAGATGGTGAGGTCGAAGAATCAGGGTCTTCAAAAAGCAGGCAGGCTCAAGCGGCTGAAGGAAGTGTTGCTGCTAAAACATCCAGTTCAGAAACTAAGACTAGTCCAGACCAAATTGCGAGTATAACACATAAGACTGAACAGGGTGAGTGA 1647 44.44 MELESADSSNLPPPKAPEVQPSVATGSGPDNAARDAPSRLSSWAKNLKIPQSLAGGQDESPTGTTAKSSFARFTSGIGLRLSPKTPTSEDGPDGSPTTAQPGLFGTFTKGIVDSSRNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFLGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLITLFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIDYYNQKRCFDGKGLVLPSQIRYVKYFERILTYFNGENQPGRRCMLRGFRLHRCPYWIRPSITVSDHNGVLFSTKKHPRTKDLSPEEFWFSAPKKGIMVFALPGEPGLTPLAGDFKIHFHDRQGDFYCWLNTTMMENRKVLNPDDLDGFDKRKLPSPGFQVEVVLIDHDGSVPPAPKTETDVKKSDGVSGTGSASVDGANATPNPSKDPGSKDKDDVFSDGEVEESGSSKSRQAQAAEGSVAAKTSSSETKTSPDQIASITHKTEQGE* 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5941803 5961856 + Vvi3g606 Vvi3g606 784281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g606 548 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 249 288 IPR000387 GO:0016311|GO:0016791
Vvi3g606 548 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 315 IPR029021 -
Vvi3g606 548 MobiDBLite consensus disorder prediction 44 72 - -
Vvi3g606 548 SMART PTEN_C2_2 319 447 IPR014020 -
Vvi3g606 548 MobiDBLite consensus disorder prediction 450 548 - -
Vvi3g606 548 MobiDBLite consensus disorder prediction 1 102 - -
Vvi3g606 548 Gene3D - 374 449 - -
Vvi3g606 548 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 15 546 - -
Vvi3g606 548 MobiDBLite consensus disorder prediction 508 548 - -
Vvi3g606 548 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 15 546 - -
Vvi3g606 548 MobiDBLite consensus disorder prediction 88 102 - -
Vvi3g606 548 CDD PTP_PTEN 145 310 IPR045101 GO:0016791
Vvi3g606 548 Gene3D Protein tyrosine phosphatase superfamily 120 317 IPR029021 -
Vvi3g606 548 ProSiteProfiles Phosphatase tensin-type domain profile. 135 314 IPR029023 -
Vvi3g606 548 MobiDBLite consensus disorder prediction 465 487 - -
Vvi3g606 548 MobiDBLite consensus disorder prediction 488 507 - -
Vvi3g606 548 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 390 445 IPR035892 -
Vvi3g606 548 ProSiteProfiles C2 tensin-type domain profile. 321 448 IPR014020 -
Vvi3g606 548 ProSitePatterns Tyrosine specific protein phosphatases active site. 251 261 IPR016130 GO:0016311|GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g606 K01110 PTEN; phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67] - vvi:100246943 1105.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g606 Vvi7g1015 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g606 . . . . . Bpe12g00294 . . . Cmo11g01384 . . . . . Cpe04g00296 Cpe15g00475 . . . . . . . Cla02g00625 . Cec02g0662 . . Cmu02g0661 . . . Cone3ag0992 Cone10ag1013 Lsi03g00522 Csa07g00734 . Cme01g00074 . . Bda15g00847 Bda14g01451 . . Bma03g01356 Bma08g00514 . . . Cma11g01730 Cma19g00587 Car11g01110 . . . . . . . . . . . . . . . . . . . Chy01g00080 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi3g606 ECH 38 511 Protein tyrosine phosphatase (PTP) family AT3G50110 66.9 1.8e-179 626.3
Vvi7g1015 ECH 10 371 Protein tyrosine phosphatase (PTP) family AT3G50110 77.6 9.0e-171 597.4
Vvi14g1602 . 1 212 Protein tyrosine phosphatase (PTP) family AT5G39400 68.1 1.1e-81 300.8
Vvi14g1601 . 1 165 Protein tyrosine phosphatase (PTP) family AT5G39400 58.1 2.0e-49 193.7
Vvi13g616 . 6 755 Protein tyrosine phosphatase (PTP) family AT3G10550 70.8 1.7e-313 1072.0
Vvi13g616 . 1 753 Protein tyrosine phosphatase (PTP) family AT5G04540 67.9 1.7e-297 1018.8
Vvi18g1273 . 22 338 Protein tyrosine phosphatase (PTP) family AT1G71860 72.0 4.3e-135 478.0
Vvi5g434 . 1 129 Protein tyrosine phosphatase (PTP) family AT3G23610 55.0 9.8e-39 156.8
Vvi17g32 . 20 868 Protein tyrosine phosphatase (PTP) family AT5G23720 64.6 0.0e+00 1103.6
Vvi5g434 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 62.3 5.4e-46 181.0
Vvi12g464 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.7 2.7e-72 268.5
Vvi13g142 . 1 209 Protein tyrosine phosphatase (PTP) family AT3G10940 83.7 7.0e-107 384.0
Vvi14g1353 . 136 583 Protein tyrosine phosphatase (PTP) family AT3G01510 76.1 1.8e-210 728.8
Vvi12g443 . 1 156 Protein tyrosine phosphatase (PTP) family AT2G32960 65.3 1.4e-66 250.0
Vvi10g102 . 1 155 Protein tyrosine phosphatase (PTP) family AT2G32960 60.8 2.2e-62 236.1
Vvi4g847 . 16 171 Protein tyrosine phosphatase (PTP) family AT2G32960 50.5 1.3e-51 200.3
Vvi15g338 . 418 650 Protein tyrosine phosphatase (PTP) family AT2G35680 64.4 2.2e-83 306.2
Vvi11g246 . 17 262 Protein tyrosine phosphatase (PTP) family AT2G35680 55.4 2.5e-79 292.7
Vvi11g246 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 54.1 6.2e-51 197.6
Vvi15g338 . 425 601 Protein tyrosine phosphatase (PTP) family AT5G56610 50.8 2.5e-44 175.6
Vvi12g443 . 1 155 Protein tyrosine phosphatase (PTP) family AT4G03960 77.4 6.7e-72 267.3
Vvi10g102 . 1 155 Protein tyrosine phosphatase (PTP) family AT4G03960 74.8 3.8e-67 251.5
Vvi4g847 . 14 171 Protein tyrosine phosphatase (PTP) family AT4G03960 59.5 4.4e-55 211.5
Vvi4g847 . 1 194 Protein tyrosine phosphatase (PTP) family AT3G02800 68.6 4.6e-76 281.2
Vvi12g443 . 1 149 Protein tyrosine phosphatase (PTP) family AT3G02800 62.4 5.0e-54 208.0
Vvi10g102 . 1 144 Protein tyrosine phosphatase (PTP) family AT3G02800 63.2 9.4e-53 203.8
Vvi13g228 . 1 174 Protein tyrosine phosphatase (PTP) family AT3G55270 61.9 7.3e-53 206.1
Vvi1g621 . 29 151 Protein tyrosine phosphatase (PTP) family AT3G55270 59.4 6.6e-38 156.4
Vvi14g1602 . 1 212 Protein tyrosine phosphatase (PTP) family AT5G39400 68.1 1.1e-81 300.8
Vvi14g1601 . 1 165 Protein tyrosine phosphatase (PTP) family AT5G39400 58.1 2.0e-49 193.7
Vvi3g606 ECH 27 545 Protein tyrosine phosphatase (PTP) family AT3G19420 71.2 7.3e-218 753.8
Vvi7g1015 ECH 9 368 Protein tyrosine phosphatase (PTP) family AT3G19420 81.1 4.6e-180 628.2
Vvi3g606 ECH 38 511 Protein tyrosine phosphatase (PTP) family AT3G50110 66.9 1.8e-179 626.3
Vvi7g1015 ECH 10 371 Protein tyrosine phosphatase (PTP) family AT3G50110 77.6 9.0e-171 597.4
Vvi13g616 . 6 755 Protein tyrosine phosphatase (PTP) family AT3G10550 70.8 1.7e-313 1072.0
Vvi13g616 . 1 753 Protein tyrosine phosphatase (PTP) family AT5G04540 67.9 1.7e-297 1018.8
Vvi6g1176 . 5 176 Protein tyrosine phosphatase (PTP) family AT3G44620 67.2 2.0e-71 266.2
Vvi2g646 . 1 290 Protein tyrosine phosphatase (PTP) family AT2G35320 64.7 1.5e-110 396.4
Vvi8g852 . 1 667 Protein tyrosine phosphatase (PTP) family AT3G09100 68.8 7.4e-280 959.9
Vvi8g852 . 1 667 Protein tyrosine phosphatase (PTP) family AT5G01290 65.1 2.8e-255 878.2
Vvi8g852 . 81 677 Protein tyrosine phosphatase (PTP) family AT5G28210 56.5 3.7e-185 645.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83