Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g606 ATGGAGTTGGAATCTGCCGATTCATCAAATCTGCCTCCTCCTAAAGCGCCAGAAGTGCAACCTTCTGTTGCCACAGGTTCTGGACCAGATAATGCTGCACGTGATGCACCATCTAGGCTATCATCATGGGCCAAAAATTTGAAAATTCCTCAGTCATTGGCAGGGGGACAAGATGAATCTCCAACTGGAACTACTGCAAAATCAAGCTTTGCACGTTTCACTAGTGGGATTGGATTGCGCTTGTCTCCAAAAACTCCTACATCTGAAGATGGTCCTGATGGATCTCCAACAACGGCACAGCCTGGTTTATTTGGAACATTTACAAAAGGAATAGTTGACTCATCTAGGAATGCAGTGAAGGCTGTGCAGGTCAAGGCTCGTCATGTGGTCTCTCAAAATAAACGAAGATATCAGGAGGGGGGATTTGACTTGGATATGACATACATCACAGAGAATATAATTGCCATGGGGTTCCCTGCTGGTGATATGAGCTCTGGGTTTTTAGGATATGTTGAGGGTTTCTACCGAAACCATATGGAGGAAGTGATCAAGTTCTTTGAAACACATCACAAGGACAAATACAAAGTATACAATCTTTGCTCGGAGAGACTGTATGATGCATCCTTGTTTGAAGGAAAGGTGGCTAGTTTCCCATTTGATGACCATAATTGCCCCCCAATTCAACTCATAACTTTATTTTGTCAAAGTGCATACTCATGGTTGAAGGAGGATATTGAGAATGTTGTGGTTGTGCACTGTAAAGCTGGAATGGCAAGGACAGGATTAATGATTTCTAGCCTTCTTCTATTCCTGAAGTTCTTCCCTACAGCTGAGGAGTCCATTGATTACTACAACCAGAAAAGATGTTTTGATGGGAAAGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAATATTTTGAACGGATCTTAACATACTTCAACGGTGAAAACCAGCCTGGGCGCAGATGCATGCTCAGGGGATTTCGGCTTCACAGGTGCCCTTATTGGATTAGGCCCTCCATTACTGTCTCTGACCATAATGGTGTTCTCTTCTCTACCAAAAAACATCCACGAACCAAGGATCTGTCGCCAGAAGAGTTTTGGTTCAGCGCACCAAAGAAAGGGATAATGGTCTTTGCACTTCCAGGGGAGCCTGGCTTGACACCATTGGCTGGGGATTTTAAAATCCATTTTCATGACCGCCAAGGAGATTTCTACTGTTGGTTAAACACCACAATGATGGAAAACAGAAAAGTTCTAAACCCTGATGATCTTGATGGGTTTGACAAGAGGAAACTGCCATCCCCAGGATTCCAGGTCGAGGTTGTGCTGATAGACCATGATGGCTCTGTTCCACCAGCACCCAAAACTGAAACTGATGTCAAGAAATCAGATGGAGTCTCGGGTACTGGTTCTGCCTCAGTTGATGGGGCCAATGCCACTCCAAACCCAAGTAAAGACCCAGGAAGCAAGGATAAAGATGATGTGTTTTCAGATGGTGAGGTCGAAGAATCAGGGTCTTCAAAAAGCAGGCAGGCTCAAGCGGCTGAAGGAAGTGTTGCTGCTAAAACATCCAGTTCAGAAACTAAGACTAGTCCAGACCAAATTGCGAGTATAACACATAAGACTGAACAGGGTGAGTGA 1647 44.44 MELESADSSNLPPPKAPEVQPSVATGSGPDNAARDAPSRLSSWAKNLKIPQSLAGGQDESPTGTTAKSSFARFTSGIGLRLSPKTPTSEDGPDGSPTTAQPGLFGTFTKGIVDSSRNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFLGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLITLFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIDYYNQKRCFDGKGLVLPSQIRYVKYFERILTYFNGENQPGRRCMLRGFRLHRCPYWIRPSITVSDHNGVLFSTKKHPRTKDLSPEEFWFSAPKKGIMVFALPGEPGLTPLAGDFKIHFHDRQGDFYCWLNTTMMENRKVLNPDDLDGFDKRKLPSPGFQVEVVLIDHDGSVPPAPKTETDVKKSDGVSGTGSASVDGANATPNPSKDPGSKDKDDVFSDGEVEESGSSKSRQAQAAEGSVAAKTSSSETKTSPDQIASITHKTEQGE* 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5941803 5961856 + Vvi3g606 Vvi3g606 784281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g606 548 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 249 288 IPR000387 GO:0016311|GO:0016791
Vvi3g606 548 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 315 IPR029021 -
Vvi3g606 548 MobiDBLite consensus disorder prediction 44 72 - -
Vvi3g606 548 SMART PTEN_C2_2 319 447 IPR014020 -
Vvi3g606 548 MobiDBLite consensus disorder prediction 450 548 - -
Vvi3g606 548 MobiDBLite consensus disorder prediction 1 102 - -
Vvi3g606 548 Gene3D - 374 449 - -
Vvi3g606 548 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 15 546 - -
Vvi3g606 548 MobiDBLite consensus disorder prediction 508 548 - -
Vvi3g606 548 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 15 546 - -
Vvi3g606 548 MobiDBLite consensus disorder prediction 88 102 - -
Vvi3g606 548 CDD PTP_PTEN 145 310 IPR045101 GO:0016791
Vvi3g606 548 Gene3D Protein tyrosine phosphatase superfamily 120 317 IPR029021 -
Vvi3g606 548 ProSiteProfiles Phosphatase tensin-type domain profile. 135 314 IPR029023 -
Vvi3g606 548 MobiDBLite consensus disorder prediction 465 487 - -
Vvi3g606 548 MobiDBLite consensus disorder prediction 488 507 - -
Vvi3g606 548 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 390 445 IPR035892 -
Vvi3g606 548 ProSiteProfiles C2 tensin-type domain profile. 321 448 IPR014020 -
Vvi3g606 548 ProSitePatterns Tyrosine specific protein phosphatases active site. 251 261 IPR016130 GO:0016311|GO:0016791
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g606 Vvi7g1015 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g606 K01110 - vvi:100246943 1105.89