Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g609 ATGGCAATAAATCAACATCATCAACAAACACCACCACAGCCCCCCAACTCGTCTTCTTTTTTATTGGATGCTCTCTACTGTGAGGAGGAGAGATGGGAGGAGGAAGAAGAAGATGAGTGTTTGCAGGAGGAAGCCTACCCTTCATCTACTCTTCTTCCTCTGCTGTTGCTGGAACAGGATTTGTTCTGGGAAGATGAGGAGCTTCTGTCTCTCTTCTCCAAAGAAGAGCAGCAAGCGAGTCTCGGTGCCGGCAATGGTGAAATGGATGGTGCTCTCGCTGTAGCTCGGCGTCAGGCCGTGGAGTGGATGATGAAGGTCAATGCCCATTACGGATTCTCAGCTGTAACTGCGATTCTCGCCATTAACTACTTGGATAGGTTCCTTTCAAGCCTCCATTTTCAGAGAGATAAGCCATGGATGATCCAGCTAGCAGCTGTGACTTGTCTCTCCTTGGCTGCCAAGGTGGAAGAGACCCAAGTGCCTCTCCTCCTAGACCTGCAAGTGGAGGACAGCAAGTATGTGTTTGAAGCGAAAACAATTCAGAGAATGGAGCTTCTGGTGCTCTCAACTCTTCAATGGAAGATGAACCCAGTCACCCCACTCTCCTTCATTGATCACATCATAAGAAGGCTTGGATTGAAGACCCATCTCCACTGGGAGTTTCTCCGCCTATGCGAGCGTTTTCTCCTCTCTGTCGTCGCCGATTCGAGGTTCGTCCGTTACCTTCCTTCTGTATTGGCTACTGCAACAATGCTTCACGTAATAAATCATGTTGAGCCCTGCAATCCTATTGAATACCAAAACCAGCTTCTGGGAATCCTCAAAATCGACAAGGATAAAGTGACTGAATGCCATCAACTCATTGTGGAAGTATCAAACACCCATTTCTATGCTCAAAACAACCCTCACAAGCGCAAGTACACCAAAATTCCTGGCAGCCCAAATGGTGTGATGGATGCATATTTCAGCTGTGATAGCTCAAACGATTCTTGGGCTGTGGAATCATCAGTGTCCTCTTCACCGGTCGACCCTCTCTTCAAGAAAAGCAGAACCCAGGAGCAGCAGATGCGGTTGCCATCACTGAACCGTGTCTTTGTGGATGTCATTGGCAGCAGTCCTCGTTAA 1125 48.18 MAINQHHQQTPPQPPNSSSFLLDALYCEEERWEEEEEDECLQEEAYPSSTLLPLLLLEQDLFWEDEELLSLFSKEEQQASLGAGNGEMDGALAVARRQAVEWMMKVNAHYGFSAVTAILAINYLDRFLSSLHFQRDKPWMIQLAAVTCLSLAAKVEETQVPLLLDLQVEDSKYVFEAKTIQRMELLVLSTLQWKMNPVTPLSFIDHIIRRLGLKTHLHWEFLRLCERFLLSVVADSRFVRYLPSVLATATMLHVINHVEPCNPIEYQNQLLGILKIDKDKVTECHQLIVEVSNTHFYAQNNPHKRKYTKIPGSPNGVMDAYFSCDSSNDSWAVESSVSSSPVDPLFKKSRTQEQQMRLPSLNRVFVDVIGSSPR* 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5973764 5975813 + Vvi3g609 Vvi3g609 784284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g609 374 SMART cyclin_7 101 189 IPR013763 -
Vvi3g609 374 CDD CYCLIN 96 188 IPR013763 -
Vvi3g609 374 SMART Cyclin_C_2 198 326 IPR004367 -
Vvi3g609 374 PANTHER CYCLINS 43 349 IPR039361 -
Vvi3g609 374 Gene3D - 197 286 - -
Vvi3g609 374 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
Vvi3g609 374 MobiDBLite consensus disorder prediction 335 354 - -
Vvi3g609 374 SUPERFAMILY Cyclin-like 62 196 IPR036915 -
Vvi3g609 374 Pfam Cyclin, C-terminal domain 198 308 IPR004367 -
Vvi3g609 374 Pfam Cyclin, N-terminal domain 95 196 IPR006671 -
Vvi3g609 374 PANTHER CYCLIN D3.1 PROTEIN 43 349 - -
Vvi3g609 374 Gene3D - 94 196 - -
Vvi3g609 374 SUPERFAMILY Cyclin-like 199 307 IPR036915 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g609 K14505 CYCD3; cyclin D3, plant - vvi:100264093 666.766
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g609 Vvi7g1011 ECH
Vvi3g609 Vvi18g719 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g609 Blo02g00838 . . Bda08g00772 . . Bma05g00508 . Cmo19g00602 Cmo11g01386 . . . . . Cpe04g00298 Cpe15g00473 . . . . . . . Cla02g00627 Cam02g0660 Cec02g0664 Cco02g0687 Clacu02g0668 Cmu02g0662 Cre02g0981 . Cone8ag1114 . . Lsi03g00524 Csa07g00732 . Cme01g00076 . . Bda15g00846 Bda14g01452 . . Bma03g01357 . . Cmo04g00511 Cmo16g00370 Cma11g01728 Cma19g00585 Car11g01112 . Cpe14g00286 Cpe01g00427 . . . . . . . . . . . . . . . . Chy01g00082 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi15g123 . 1 295 Core Cell Cycle Gene Families AT3G48750 86.8 6.8e-153 537.0
Vvi18g35 ECH 1 308 Core Cell Cycle Gene Families AT3G48750 54.4 5.8e-96 347.8
Vvi8g18 ECH 82 373 Core Cell Cycle Gene Families AT3G48750 58.4 7.6e-96 347.4
Vvi8g18 ECH 82 379 Core Cell Cycle Gene Families AT3G54180 83.9 1.3e-149 526.2
Vvi18g35 ECH 1 310 Core Cell Cycle Gene Families AT3G54180 64.4 2.4e-116 415.6
Vvi15g123 . 1 290 Core Cell Cycle Gene Families AT3G54180 55.2 7.0e-92 334.3
Vvi8g18 ECH 82 379 Core Cell Cycle Gene Families AT2G38620 70.1 9.2e-119 423.3
Vvi18g35 ECH 1 310 Core Cell Cycle Gene Families AT2G38620 54.6 6.2e-91 330.9
Vvi18g35 ECH 1 308 Core Cell Cycle Gene Families AT1G76540 83.4 4.2e-153 537.7
Vvi8g18 ECH 82 373 Core Cell Cycle Gene Families AT1G76540 67.2 9.2e-116 413.7
Vvi15g123 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.0 1.3e-93 340.1
Vvi18g35 ECH 1 314 Core Cell Cycle Gene Families AT1G20930 82.5 1.7e-154 542.3
Vvi8g18 ECH 82 379 Core Cell Cycle Gene Families AT1G20930 67.3 8.9e-119 423.7
Vvi15g123 . 1 290 Core Cell Cycle Gene Families AT1G20930 54.7 2.8e-96 349.0
Vvi6g904 ECH 1 459 Core Cell Cycle Gene Families AT5G10270 73.9 3.0e-209 724.9
Vvi7randomg13 . 1 205 Core Cell Cycle Gene Families AT5G10270 86.3 1.6e-106 383.6
Vvi19g220 ECH 123 459 Core Cell Cycle Gene Families AT5G10270 53.0 3.3e-99 359.4
Vvi5g361 ECH 102 418 Core Cell Cycle Gene Families AT5G10270 53.5 1.3e-98 357.5
Vvi18randomg206 . 100 415 Core Cell Cycle Gene Families AT5G10270 52.1 5.8e-96 348.6
Vvi12g1180 . 142 458 Core Cell Cycle Gene Families AT5G10270 52.1 7.6e-96 348.2
Vvi14g419 ECH 114 432 Core Cell Cycle Gene Families AT5G10270 51.3 1.3e-95 347.4
Vvi12g293 ECH 52 368 Core Cell Cycle Gene Families AT5G10270 52.0 7.1e-94 341.7
Vvi17g47 . 96 408 Core Cell Cycle Gene Families AT5G10270 51.8 3.9e-92 335.9
Vvi5g1148 . 93 396 Core Cell Cycle Gene Families AT5G10270 53.1 3.7e-90 329.3
Vvi4g728 . 133 436 Core Cell Cycle Gene Families AT5G10270 53.1 1.8e-89 327.0
Vvi6g904 ECH 65 457 Core Cell Cycle Gene Families AT5G64960 69.6 2.8e-169 592.0
Vvi7randomg13 . 25 205 Core Cell Cycle Gene Families AT5G64960 86.2 5.5e-93 338.6
Vvi19g220 ECH 177 439 Core Cell Cycle Gene Families AT5G64960 54.7 6.8e-83 305.1
Vvi18randomg206 . 154 415 Core Cell Cycle Gene Families AT5G64960 54.0 2.6e-82 303.1
Vvi5g361 ECH 156 418 Core Cell Cycle Gene Families AT5G64960 52.5 2.8e-81 299.7
Vvi12g1180 . 196 458 Core Cell Cycle Gene Families AT5G64960 52.9 4.1e-80 295.8
Vvi14g419 ECH 168 432 Core Cell Cycle Gene Families AT5G64960 51.4 9.1e-80 294.7
Vvi12g293 ECH 106 368 Core Cell Cycle Gene Families AT5G64960 52.2 2.2e-78 290.0
Vvi5g1148 . 134 396 Core Cell Cycle Gene Families AT5G64960 52.5 3.8e-78 289.3
Vvi4g728 . 174 436 Core Cell Cycle Gene Families AT5G64960 52.5 1.5e-77 287.3
Vvi17g47 . 150 420 Core Cell Cycle Gene Families AT5G64960 50.7 1.2e-76 284.3
Vvi17g254 ECH 10 416 Core Cell Cycle Gene Families AT1G73690 74.4 5.3e-169 590.9
Vvi14g835 ECH 2 343 Core Cell Cycle Gene Families AT1G73690 72.2 1.6e-144 509.6
Vvi14g835 ECH 10 340 Core Cell Cycle Gene Families AT1G66750 77.0 2.5e-154 542.0
Vvi17g254 ECH 14 344 Core Cell Cycle Gene Families AT1G66750 75.9 8.8e-152 533.5
Vvi15g123 . 1 287 Core Cell Cycle Gene Families AT1G66750 50.2 6.1e-76 281.6
Vvi17g254 ECH 10 417 Core Cell Cycle Gene Families AT1G18040 74.5 4.3e-171 597.8
Vvi14g835 ECH 1 347 Core Cell Cycle Gene Families AT1G18040 74.4 7.4e-147 517.3
Vvi7g1265 ECH 1 482 Core Cell Cycle Gene Families AT5G63610 75.7 1.2e-204 709.5
Vvi18g229 . 93 547 Core Cell Cycle Gene Families AT1G44110 62.2 1.3e-147 520.0
Vvi18g230 . 2 340 Core Cell Cycle Gene Families AT1G44110 63.3 8.7e-123 437.6
Vvi4g368 . 121 401 Core Cell Cycle Gene Families AT1G44110 55.0 1.8e-88 323.6
Vvi9g421 . 212 490 Core Cell Cycle Gene Families AT1G44110 55.2 1.7e-86 317.0
Vvi18g693 ECH 37 362 Core Cell Cycle Gene Families AT1G44110 50.3 1.6e-84 310.5
Vvi18g229 . 82 545 Core Cell Cycle Gene Families AT1G77390 52.2 6.0e-121 431.4
Vvi18g230 . 58 338 Core Cell Cycle Gene Families AT1G77390 63.0 1.9e-103 373.2
Vvi4g368 . 121 399 Core Cell Cycle Gene Families AT1G77390 53.9 1.4e-80 297.4
Vvi9g421 . 211 490 Core Cell Cycle Gene Families AT1G77390 54.1 5.1e-80 295.4
Vvi4g368 . 121 399 Core Cell Cycle Gene Families AT5G25380 72.0 4.8e-110 395.2
Vvi18g229 . 252 540 Core Cell Cycle Gene Families AT5G25380 53.3 1.9e-82 303.5
Vvi18g693 ECH 58 352 Core Cell Cycle Gene Families AT5G25380 50.3 2.0e-79 293.5
Vvi18g230 . 58 330 Core Cell Cycle Gene Families AT5G25380 53.1 3.8e-75 279.3
Vvi4g368 . 121 337 Core Cell Cycle Gene Families AT5G11300 76.5 2.7e-91 332.8
Vvi9g421 . 212 428 Core Cell Cycle Gene Families AT5G11300 70.5 8.5e-85 311.2
Vvi18g229 . 265 485 Core Cell Cycle Gene Families AT5G11300 56.6 6.5e-69 258.5
Vvi18g693 ECH 81 300 Core Cell Cycle Gene Families AT5G11300 55.9 2.3e-66 250.0
Vvi18g230 . 58 277 Core Cell Cycle Gene Families AT5G11300 54.5 6.3e-64 241.9
Vvi3g655 ECH 70 272 Core Cell Cycle Gene Families AT5G11300 51.5 9.4e-52 201.4
Vvi9g421 . 19 491 Core Cell Cycle Gene Families AT1G15570 56.3 1.4e-128 456.8
Vvi4g368 . 4 399 Core Cell Cycle Gene Families AT1G15570 52.7 4.0e-104 375.6
Vvi18g693 ECH 81 359 Core Cell Cycle Gene Families AT1G15570 52.7 8.1e-81 298.1
Vvi18g229 . 265 532 Core Cell Cycle Gene Families AT1G15570 56.3 1.1e-80 297.7
Vvi18g230 . 49 337 Core Cell Cycle Gene Families AT1G15570 51.6 7.1e-77 285.0
Vvi9g421 . 1 490 Core Cell Cycle Gene Families AT1G80370 54.8 6.9e-128 454.5
Vvi4g368 . 114 399 Core Cell Cycle Gene Families AT1G80370 69.2 9.4e-109 391.0
Vvi18g229 . 265 545 Core Cell Cycle Gene Families AT1G80370 54.8 8.3e-81 298.1
Vvi18g693 ECH 81 351 Core Cell Cycle Gene Families AT1G80370 53.5 3.5e-79 292.7
Vvi18g230 . 58 325 Core Cell Cycle Gene Families AT1G80370 52.2 8.3e-73 271.6
Vvi18g693 ECH 1 364 Core Cell Cycle Gene Families AT5G43080 62.6 1.8e-120 429.5
Vvi4g368 . 122 401 Core Cell Cycle Gene Families AT5G43080 52.7 7.0e-80 294.7
Vvi9g421 . 214 490 Core Cell Cycle Gene Families AT5G43080 52.5 7.2e-77 284.6
Vvi18g693 ECH 1 363 Core Cell Cycle Gene Families AT1G47210 60.2 5.4e-123 438.0
Vvi4g368 . 122 389 Core Cell Cycle Gene Families AT1G47210 53.0 9.0e-78 287.7
Vvi9g421 . 214 490 Core Cell Cycle Gene Families AT1G47210 51.8 5.0e-76 282.0
Vvi18g693 ECH 81 363 Core Cell Cycle Gene Families AT1G47220 61.5 5.7e-100 361.3
Vvi4g368 . 122 389 Core Cell Cycle Gene Families AT1G47220 52.6 2.0e-73 273.1
Vvi18g229 . 267 532 Core Cell Cycle Gene Families AT1G47220 50.4 2.9e-72 269.2
Vvi18g693 ECH 1 363 Core Cell Cycle Gene Families AT1G47230 60.6 2.3e-121 432.6
Vvi4g368 . 124 401 Core Cell Cycle Gene Families AT1G47230 51.8 9.3e-75 277.7
Vvi9g421 . 215 490 Core Cell Cycle Gene Families AT1G47230 51.8 2.7e-74 276.2
Vvi8g490 . 1 453 Core Cell Cycle Gene Families AT4G37490 51.5 6.2e-107 384.8
Vvi13g75 . 1 462 Core Cell Cycle Gene Families AT4G37490 51.0 4.5e-105 378.6
Vvi8g490 . 1 348 Core Cell Cycle Gene Families AT5G06150 54.7 9.0e-85 310.8
Vvi13g75 . 1 354 Core Cell Cycle Gene Families AT5G06150 55.8 1.6e-81 300.1
Vvi3g202 . 155 322 Core Cell Cycle Gene Families AT5G06150 52.4 2.2e-43 173.3
Vvi8g490 . 1 407 Core Cell Cycle Gene Families AT3G11520 53.4 2.1e-101 366.3
Vvi13g75 . 5 413 Core Cell Cycle Gene Families AT3G11520 52.3 1.5e-96 350.1
Vvi3g202 . 156 381 Core Cell Cycle Gene Families AT3G11520 51.8 8.8e-60 228.0
Vvi6g928 . 108 448 Core Cell Cycle Gene Families AT2G26760 55.7 4.3e-99 358.6
Vvi8g490 . 155 444 Core Cell Cycle Gene Families AT2G26760 61.6 2.8e-98 355.9
Vvi18g1101 ECH 38 438 Core Cell Cycle Gene Families AT2G17620 57.9 1.3e-120 430.3
Vvi3g202 . 28 424 Core Cell Cycle Gene Families AT2G17620 54.7 2.1e-110 396.4
Vvi8g490 . 180 453 Core Cell Cycle Gene Families AT2G17620 50.2 8.3e-67 251.5
Vvi18g1101 ECH 37 393 Core Cell Cycle Gene Families AT4G35620 57.8 1.9e-102 369.8
Vvi3g202 . 28 381 Core Cell Cycle Gene Families AT4G35620 56.5 2.9e-95 345.9
Vvi8g490 . 180 407 Core Cell Cycle Gene Families AT4G35620 53.3 9.6e-59 224.6
Vvi19g1155 . 344 559 Core Cell Cycle Gene Families AT4G35620 51.4 6.0e-53 205.3
Vvi18g1101 ECH 1 436 Core Cell Cycle Gene Families AT1G20610 63.6 2.9e-144 508.8
Vvi3g202 . 38 425 Core Cell Cycle Gene Families AT1G20610 60.3 3.4e-121 432.2
Vvi19g1155 . 341 585 Core Cell Cycle Gene Families AT1G20610 51.4 5.2e-61 232.3
Vvi18g1101 ECH 1 333 Core Cell Cycle Gene Families AT1G76310 64.5 6.0e-105 377.9
Vvi3g202 . 4 321 Core Cell Cycle Gene Families AT1G76310 56.8 3.1e-85 312.4
Vvi13g75 . 181 353 Core Cell Cycle Gene Families AT1G76310 53.7 7.0e-45 178.3
Vvi8g490 . 180 347 Core Cell Cycle Gene Families AT1G76310 54.7 2.7e-44 176.4
Vvi19g1155 . 341 500 Core Cell Cycle Gene Families AT1G76310 55.3 8.9e-40 161.4
Vvi1g779 . 1 319 Core Cell Cycle Gene Families AT1G70210 64.2 9.6e-111 397.1
Vvi3g609 ECH 61 335 Core Cell Cycle Gene Families AT4G34160 56.7 1.9e-83 306.6
Vvi7g1011 ECH 19 272 Core Cell Cycle Gene Families AT4G34160 58.8 5.9e-77 285.0
Vvi3g609 ECH 63 363 Core Cell Cycle Gene Families AT5G67260 53.4 2.8e-85 312.8
Vvi7g1011 ECH 27 299 Core Cell Cycle Gene Families AT5G67260 55.9 6.8e-79 291.6
Vvi3g609 ECH 61 375 Core Cell Cycle Gene Families AT3G50070 53.5 5.5e-88 321.6
Vvi7g1011 ECH 1 310 Core Cell Cycle Gene Families AT3G50070 50.1 9.3e-88 320.9
Vvi18g483 . 64 269 Core Cell Cycle Gene Families AT5G65420 59.6 8.9e-67 250.8
Vvi18g483 . 57 238 Core Cell Cycle Gene Families AT5G10440 57.9 7.1e-54 207.6
Vvi12g600 . 1 291 Core Cell Cycle Gene Families AT4G03270 51.6 1.3e-66 250.4
Vvi14g219 . 1 277 Core Cell Cycle Gene Families AT5G27620 67.9 6.3e-106 380.9
Vvi6g1113 . 1 86 Core Cell Cycle Gene Families AT2G27960 93.0 1.7e-43 171.8
Vvi6g1113 . 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 2.4e-39 157.9
Vvi4g234 . 13 1007 Core Cell Cycle Gene Families AT3G12280 69.9 0.0e+00 1334.3
Vvi14g1069 . 1 582 Core Cell Cycle Gene Families AT3G12280 53.8 3.7e-166 582.8
Vvi7g253 . 1 445 Core Cell Cycle Gene Families AT1G02970 62.3 6.7e-161 564.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003809 3 1 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 45