Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g610 ATGACCGACGAAACCCTTGATGTTACTAGCAAGGACCTCATCAGCTCCGACCATACTGTTGTCCCTGTTGACTTCTCCGATTCCTCTGGCTACGATTCCGCCGATAAGAAGGGAATTATAATTGTGAAGCTGCGGCGAGGGCAAGAACTGAGGCTGAGAGCTATTGCCAGAAAGGGGATTGGGAAGGACCACGCCAAATGGTCACCGGCGGCTACTGTTACTTTTATGTACGAGCCTGAGATTCATATCAATGAAGATTTGATGGAATCTTTGACGCTTGAGGAGAAAACAAGTTGGGTTGAGAGCAGTCCCACAAAAGTTTTCGACATTGATGCTAGTTCCCAACAGGTTGTTGTGGCTGATGCTGAGGCATACACTTATGATGATGAAGTGCTCAAGAAAGCAGAAGCTATGGGGAAGCCAGGGCTTGTGGAGATCTATGCCAAAGAAGACAGTTTTATATTCACAGTTGAATCTACTGGTGCAATCAAAGCTTCTCAGTTGGTGCTCAATGCAATAGATGTTCTTAAACAAAAGCTTGATGCAGTGCGGCTATCAGAGGATACGGTAGAAGCTGATGATCAATTTGGTGAACTCGGTGCTCATATGCGAGGAGGATGA 621 46.05 MTDETLDVTSKDLISSDHTVVPVDFSDSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSEDTVEADDQFGELGAHMRGG* 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5981435 5989264 - Vvi3g610 Vvi3g610 784285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g610 206 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 3 69 IPR036643 -
Vvi3g610 206 Gene3D - 38 191 IPR036603 GO:0006351|GO:0046983
Vvi3g610 206 SUPERFAMILY RBP11-like subunits of RNA polymerase 100 188 IPR036603 GO:0006351|GO:0046983
Vvi3g610 206 PANTHER BNAA09G08480D PROTEIN 2 203 - -
Vvi3g610 206 PANTHER DNA-DIRECTED RNA POLYMERASE 2 203 - -
Vvi3g610 206 SMART rpoldneu2 1 186 IPR011263 GO:0003899|GO:0006351
Vvi3g610 206 Pfam RNA polymerase Rpb3/RpoA insert domain 7 68 IPR011262 GO:0003899|GO:0006351|GO:0046983
Vvi3g610 206 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 139 180 IPR011263 GO:0003899|GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g610 K03011 RPB3, POLR2C; DNA-directed RNA polymerase II subunit RPB3 - vvi:100258926 401.749
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g610 . . . . . Bpe12g00297 . . . Cmo11g01387 . . . . . Cpe04g00299 . . . . . . . . . . . . . . . . Cone8ag1113 . . . . . . . . Bda15g00845 . . . . . . . . . . Car11g01113 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009530 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32