Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g614 ATGTCTCACCTCTCTCTTCTGTTTCTCTTCTCCGTCTTCTCCGCCACCCATGCCCTCACTCTCCCCTCCGACGTCTCTGCTCTTCAATCCTTCAAAGCCTCCATTAAACCCTCCTCTGTTTCTCCTTGGTCATGCCTCGCTTCTTGGAACTTCTCCACCGATCCATGCTCTGTTCCTCGCCGGACTCATTTCACCTGTGGTATTTCTTGCTCCGCAGACTCCACCAGGGTGATATCAATCACTCTCGACCCTGCTGGATACGCCGGCGCTCTCTCTCCGGCCATAGCCAAACTTACCCAACTTACCGTCCTCGACCTCTCTGATAATTCCTTATCCGGGTATGTTCCAAGCGCACTTTCCTCTCTTTCCAACCTCCAAATCCTCACCCTCCGGTCCAACTCATTCTCTGGTCCTCTCCCTCAAGCCATTACCGCGATCAAGTCTCTTGAATCTCTCGACATTTCTCATAATTTTCTATCTGGGTCGCTCCCCAAAACCATGGTTTCTCTCTCCAGCTTGAGGAGACTCGATCTCAGCTTCAACAGGATTACGGGGACCCTCCCCAAGCTTCCGTCGTCCTTATCAGAACTCGCTCTCAGGAGCAATTCTCTATCTGGGTATCTCCTGAAATCGTCCTTCGACGGTTTAACTCGATTGGAAGTAGTCGAACTCAGCGCAAACGCCTTCACGGGGCCAATACAAAGCTGGTTCTTCCTCCTCCCTTCCCTGCAACAGGTCAATTTAGCCAACAACAGCTTCACCGGTCTCGCGATCTTGAAACCCACCGCCAGCGACCTCGTCGCCGTCGATCTGGGCTTCAACCAGATCAAAGGCTACGTTCCCACGAATTTCTCAGCCTTCCCTCTCCTCTCATCACTCTCGCTTCGCTACAACCAGTTGCGTGGCCCAATTCCGCTGGACTACAGCAAGAAGGAGACCCTAAAGAGACTATTCCTGGACGGGAACTTCTTGAACGGAAAAGCGCCTGTGGGATTCTTCTCCGGGTGGTCGGGGGTATCGGGGAGCTTGGGGGACAACTGCCTACAGAGCTGTCCGACATCGTCTCAGCTGTGCCTACCATCACAGAAACCCAACTCTATTTGCAAGCAAGCCTACGGAGGAAAACCAAGGTCATACTTTAGCACATGGCGGTGTGCTTAG 1161 52.8 MSHLSLLFLFSVFSATHALTLPSDVSALQSFKASIKPSSVSPWSCLASWNFSTDPCSVPRRTHFTCGISCSADSTRVISITLDPAGYAGALSPAIAKLTQLTVLDLSDNSLSGYVPSALSSLSNLQILTLRSNSFSGPLPQAITAIKSLESLDISHNFLSGSLPKTMVSLSSLRRLDLSFNRITGTLPKLPSSLSELALRSNSLSGYLLKSSFDGLTRLEVVELSANAFTGPIQSWFFLLPSLQQVNLANNSFTGLAILKPTASDLVAVDLGFNQIKGYVPTNFSAFPLLSSLSLRYNQLRGPIPLDYSKKETLKRLFLDGNFLNGKAPVGFFSGWSGVSGSLGDNCLQSCPTSSQLCLPSQKPNSICKQAYGGKPRSYFSTWRCA* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6023243 6024532 + Vvi3g614 Vvi3g614 784289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g614 386 PRINTS Leucine-rich repeat signature 101 114 - -
Vvi3g614 386 PRINTS Leucine-rich repeat signature 170 183 - -
Vvi3g614 386 Pfam Leucine rich repeat N-terminal domain 22 57 IPR013210 -
Vvi3g614 386 SUPERFAMILY L domain-like 64 350 - -
Vvi3g614 386 Gene3D Ribonuclease Inhibitor 22 191 IPR032675 -
Vvi3g614 386 SMART LRR_typ_2 98 121 IPR003591 -
Vvi3g614 386 SMART LRR_typ_2 122 145 IPR003591 -
Vvi3g614 386 SMART LRR_typ_2 170 197 IPR003591 -
Vvi3g614 386 SMART LRR_typ_2 240 266 IPR003591 -
Vvi3g614 386 Pfam Leucine rich repeat 142 183 IPR001611 GO:0005515
Vvi3g614 386 Pfam Leucine rich repeat 96 134 IPR001611 GO:0005515
Vvi3g614 386 ProSiteProfiles Leucine-rich repeat profile. 172 194 IPR001611 GO:0005515
Vvi3g614 386 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 1 378 - -
Vvi3g614 386 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 378 - -
Vvi3g614 386 Gene3D Ribonuclease Inhibitor 192 359 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g614 - - - vvi:100248682 716.072
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g614 . Blo03g00087 . . . Bpe12g00298 . . Cmo19g00600 Cmo11g01389 . . . . . Cpe04g00301 Cpe15g00471 . . . . . . . Cla02g00630 Cam02g0664 Cec02g0668 Cco02g0692 Clacu02g0672 Cmu02g0666 Cre02g0985 . Cone8ag1111 Cone3ag0994 Cone10ag1015 Lsi03g00527 Csa07g00728 . Cme01g00080 . . Bda15g00844 . . . . Bma08g00506 . . . Cma11g01726 . Car11g01115 . . . Bhi11g01177 . . . . . . . . . . . . . . . Chy01g00086 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008155 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 35