Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g617 ATGGCTTCCTTCTCAATCTCCACCAGCCTCTCTCCTTCACACTCACTCTCAAAACGATCACCTCTGTCACCTGCTTACTCTCGTCCTTGGGTCCCATCTCACCCTCGTCTTAACTCCTCTACTTGGAGGTTCAGACCTCCGAAATTGAACGCCCGACTCGAAAACAAGCCCGGAGACCCACCCTCCACCCCGCGAGAGGCCCAATCCTTGTCTGACAAACAGCTTCAGGAACTGACACCATCATCTGGATCATGTGATCCCCTATGTTCTGTTGATGAAACAAGCTCACAAGATTTTGAAGCCACATACCAGCCAAAGACCGATTTGCTGAAAGCTCTTGCAATTCTTGCAGCAGCTACAACAGGGGCAGTTGCAATTAATCAGTCGTGGGTTGCTGCTAATCAGGATGCTGCTATGGCATTGCTATTTGGAGTGGGATATGCTGGAATAATTTTTGAAGAATCTCTAGCCTTTAACAAAAGTGGAGTGGGGTTATTGATGGCTGTGAGCTTATGGGTTATAAGAAGCATTGGGGCACCTTCAACTGATATAGCTGTTTCAGAGCTAACTCATGCATCTGCTGAAGTTAGTGAAATAGTGTTTTTCTTGCTTGGTGCAATGACCATTGTTGAGATTGTTGATGCTCATCAAGGGTTTAAGCTGGTTACTGACAATATAACAACTCGCAAGCCACAAACTCTACTTTGGGTGGTTGGTTTTGTGACTTTTTTCCTCAGTTCGATCCTTGACAACCTGACGACCACCATTATCATGGTTTCCTTATTGAGAAAACTGGTGCCTCCATCAGAATTCCGCAAGTTCCTAGGAGCAGTTGTTGTGATAGCCGCAAATGCTGGTGGTGCTTGGACTCCCATTGGTGATGTTACCACTACTATGCTGTGGATTCATGGTCAGATATCCACATTGCAGACAATGAAGGGTTTGTTTATACCTTCTGCTGTTTCTCTGGCTGTCCCGCTGGCTCTTATGTCCCTCACTAGTGAAGTTAATGGGAAAGGACAGGATTCTCCCAATGTTTTGGCATCTGAACAGATGGCTCCAAGAGGACAGCTTGTTTTCGCTGTTGGAGTTGGAGCTTTGGTGTTTGTTCCAGTGTTCAAGGCTGTGACTGGTTTGCCTCCTTTTATGGGTATTCTGCTTGGGCTTGGAGTTCTTTGGATTCTGACAGATGCCATTCATTATGGTGAATCGGAAAGACAAAGATTGAAAGTTCCACAGGCTTTATCACGCATTGACACTCAAGGAGCCCTTTTCTTCCTTGGAATCCTTTTATCTGTCAGCAGTCTCGAGGCAGCAGGGATTCTCCGGGAATTAGCAAATTACCTTGATGCACATATCCCTAATGTTGAACTTATTGCAAGTTCAATAGGTGTCGTGTCAGCAATTATAGACAATGTTCCACTGGTTGCAGCGACAATGGGAATGTATGACCTTACCTCATACCCCCAAGACTCTGAGTTCTGGCAGCTGATTGCCTATTGTGCTGGTACGGGTGGATCCATGCTAGTTATTGGCTCTGCTGCTGGAGTTGCATTTATGGGGATGGAAAAAGTGGACTTCTTTTGGTACTTAAGGAAGGTGAGTGGGTTTGCCTTTGCAGGCTATGCTGCTGGTATTGCTGCCTACCTAGCACTTCATAACCTCCACATTTCCACAACTCTAGCTCATGTTCCTTTCTTCTCTGGTTCATAA 1713 45.83 MASFSISTSLSPSHSLSKRSPLSPAYSRPWVPSHPRLNSSTWRFRPPKLNARLENKPGDPPSTPREAQSLSDKQLQELTPSSGSCDPLCSVDETSSQDFEATYQPKTDLLKALAILAAATTGAVAINQSWVAANQDAAMALLFGVGYAGIIFEESLAFNKSGVGLLMAVSLWVIRSIGAPSTDIAVSELTHASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPQTLLWVVGFVTFFLSSILDNLTTTIIMVSLLRKLVPPSEFRKFLGAVVVIAANAGGAWTPIGDVTTTMLWIHGQISTLQTMKGLFIPSAVSLAVPLALMSLTSEVNGKGQDSPNVLASEQMAPRGQLVFAVGVGALVFVPVFKAVTGLPPFMGILLGLGVLWILTDAIHYGESERQRLKVPQALSRIDTQGALFFLGILLSVSSLEAAGILRELANYLDAHIPNVELIASSIGVVSAIIDNVPLVAATMGMYDLTSYPQDSEFWQLIAYCAGTGGSMLVIGSAAGVAFMGMEKVDFFWYLRKVSGFAFAGYAAGIAAYLALHNLHISTTLAHVPFFSGS* 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6038009 6059773 + Vvi3g617 Vvi3g617 784292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g617 570 Pfam Citrate transporter 148 503 IPR004680 GO:0016021|GO:0055085
Vvi3g617 570 PANTHER SODIUM/PROTON ANTIPORTER 1-RELATED 1 570 IPR045016 GO:0006814|GO:0015297
Vvi3g617 570 MobiDBLite consensus disorder prediction 1 22 - -
Vvi3g617 570 PANTHER BNAC03G40960D PROTEIN 1 570 - -
Vvi3g617 570 MobiDBLite consensus disorder prediction 62 87 - -
Vvi3g617 570 MobiDBLite consensus disorder prediction 1 87 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g617 - - vvi:100265867 1028.85