Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g618 ATGGCGAGGAATGTTGCGCAGGCTGATGCGTCTGTGAAATCTGGGAAGTGGCAAAGGAACAAATATGTGGGTGTTTCTCTTGTTGGGAAAACGCTTGCTGTGATGGGGTTTGGTAAGGTTGGGTCAGAAGTTACCCGACGTGCCAAGGGGCTTGGTATGCATGTGATTGCACATGATCCATATGCAGCTGCAGACCGTGCCCGTGCAATAGGTGTGGAACTTGTGGGCTTTGATGAAGCCATATCAACTGCAGATTTCATATCACTTCATATGCCCCTTACTCCTGCTACGTCGAAGATGCTCAATGATGAAACTTTTGCCAAAATGAAGAAAGGAGTTCGGATAATTAATGTTGCTCGTGGGGGGGTAATTGATGAAGAAGCTCTTGTGAGGGCACTGGATGCTGGAATTGTTGCACAGGCTGCTCTTGATGTTTTCACAGAAGAGCCACCCCCAAAAGACAGCAAATTAATACTACATGAAAATGTAACTGTGACTCCTCATCTTGGTGCCAGCACTATGGAAGCTCAGGAAGGAGTAGCCATTGAGATAGCTGAAGCTGTTGTTGGAGCCTTAAAGGGGGAGCTTGCTGCTACTGCAGTCAATGCACCAATGGTTCCTGCAGAGGTTCTGTCAGAGCTGAAACCATTTGTTGAACTTGCTGAGAAACTTGGGAGGCTGGCTGTCCAGTTAGTATCCGGTGGAAGTGGTGTAAAGTCAGTGAAAGTGACATATGCTTCTGCCAGGGCTCCTGATGACCTTGACACAAGGCTACTCCGAGCCATGATCACTAAGGGTCTGATTGAGCCCATATCCAGTGTTTTTGTGAACTTGGTGAATGCTGATTTCTCTGCTAAACAGAGAGGACTCCGAATAACAGAAGAACGATCAATTCTAGATGGTTCACCTGAGAGTCCACTTGAGTTCATCCAGGTTCAGATTGCTAATGTGGAATCAAAATTTGCCAGTGCCATTTCTGAGTCTGGGGAGATTACAGTGGAGGGACGTGTCAAAGATGGGATTCCCCATTTGACAAAGGTAGGGTCTTTTGAAGTGGATGTGAGTTTGGAAGGTAGCATTATACTTTGCAGACAGGTAGATCAGCCGGGTATGATTGGAAAGGTTGGGAGCATTTTGGGGGAGGAGAACGTGAATGTGAGCTTCATGAGCGTTGGAAGAGTTGCGCCTCGGAAGCATGCTGTAATGGCTATTGGAGTGGATGAGCAACCTAGCAAGGTAACGTTGAAGAAGATTGGGGAGATTCCAGCAGTAGAAGAGTTTGTTTTCCTCAAGTTGTAA 1299 46.81 MARNVAQADASVKSGKWQRNKYVGVSLVGKTLAVMGFGKVGSEVTRRAKGLGMHVIAHDPYAAADRARAIGVELVGFDEAISTADFISLHMPLTPATSKMLNDETFAKMKKGVRIINVARGGVIDEEALVRALDAGIVAQAALDVFTEEPPPKDSKLILHENVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLSELKPFVELAEKLGRLAVQLVSGGSGVKSVKVTYASARAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFSAKQRGLRITEERSILDGSPESPLEFIQVQIANVESKFASAISESGEITVEGRVKDGIPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSILGEENVNVSFMSVGRVAPRKHAVMAIGVDEQPSKVTLKKIGEIPAVEEFVFLKL* 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6060014 6064496 - Vvi3g618 Vvi3g618 784293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g618 432 ProSiteProfiles ACT domain profile. 360 432 IPR002912 -
Vvi3g618 432 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2 170 IPR006140 GO:0051287
Vvi3g618 432 Pfam ACT domain 360 421 IPR002912 -
Vvi3g618 432 Gene3D - 206 358 IPR029009 -
Vvi3g618 432 Gene3D - 1 178 - -
Vvi3g618 432 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 109 125 IPR029753 -
Vvi3g618 432 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 80 102 IPR029753 -
Vvi3g618 432 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 1 427 - -
Vvi3g618 432 SUPERFAMILY Serine metabolism enzymes domain 208 354 IPR029009 -
Vvi3g618 432 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 171 IPR036291 -
Vvi3g618 432 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 213 318 IPR045626 -
Vvi3g618 432 Gene3D - 359 432 - -
Vvi3g618 432 CDD ACT_3PGDH-xct 361 432 - -
Vvi3g618 432 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 32 59 IPR029752 -
Vvi3g618 432 SUPERFAMILY ACT-like 350 429 IPR045865 -
Vvi3g618 432 PANTHER FORMATE DEHYDROGENASE 1 1 427 - -
Vvi3g618 432 SMART AdoHcyase_NAD_2 20 174 IPR015878 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g618 K00058 serA, PHGDH; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] - vvi:100260655 798.505
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g618 Vvi18g717 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g618 Blo02g00840 . . Bda08g00769 . . Bma05g00525 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00509 Cmo16g00367 . . . . Cpe14g00284 Cpe01g00426 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001181 3 2 4 3 3 1 4 2 2 2 2 2 3 2 2 4 2 6 4 2 2 2 3 2 2 2 2 3 2 3 78