Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g619 ATGTCGTTCGCAAACGCCGTGAGAAAGCGCGTGGGGGTGTTGGGGCTGGTGCCGTGCGCGGTGGGCGGCACCGCCATCAAAGAGTGGGCGCGTGGACAGCCCTTGTACGAGAACATGGTGAACAGGGCTAAAGAGTCGGTGAAGAGCGGAGGGGAGATCAAGGCGCTGCTGTGGTATCAGGGAGAGAGTGATACGTCGTCGTATAACGACGCTAAGTCGTACAAGGATAACATGGAGAGCTTAATCCAAAATGTTCGTCAAGATCTGGGCTCGCCTTCTCTCCCAATCATCCAGGTTGCAATAGCATCGGGTGATAGCAAGTACATGGAAAGAGTGAGAGAAGCGCAGAAGGAGATCGATTTTCCCAATGTAGTGTGTGTAGACGCCAAGGGATTGCCACTGAAAGAGGATCATCTTCATCTAACCACGGAGGCCCAGGTTAGACTTGGGCAAATGCTGGCTGATGCATACCTTGCCAACTTTGCACCCCCACCAGCTTCTTCTTGA 507 53.45 MSFANAVRKRVGVLGLVPCAVGGTAIKEWARGQPLYENMVNRAKESVKSGGEIKALLWYQGESDTSSYNDAKSYKDNMESLIQNVRQDLGSPSLPIIQVAIASGDSKYMERVREAQKEIDFPNVVCVDAKGLPLKEDHLHLTTEAQVRLGQMLADAYLANFAPPPASS* 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6071390 6072507 - Vvi3g619 Vvi3g619 784294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g619 168 SUPERFAMILY SGNH hydrolase 3 160 - -
Vvi3g619 168 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 1 161 - -
Vvi3g619 168 PANTHER BNACNNG62850D PROTEIN 1 161 - -
Vvi3g619 168 Gene3D SGNH hydrolase 1 162 IPR036514 -
Vvi3g619 168 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 1 158 IPR005181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g619 - - - vvi:100260676 335.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g619 Vvi18g716 ECH
Vvi3g619 Vvi18g715 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g619 Blo02g00841 . . Bda08g00768 . . Bma05g00526 . Cmo19g00597 . . . . . . . Cpe15g00469 . . . . . . . Cla02g00633 Cam02g0666 . . Clacu02g0674 Cmu02g0668 . Cone12ag1073 . . . Lsi03g00529 . . . . . . . . . . . . . . . Cma19g00581 . Car19g00443 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009277 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 34