Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g620 ATGAGTTTCAACGGGGATTATCTCTGCTCATGGTGGAGGATCACTGCGTTTGCGTTTGCTTTTGCTTTTCTTCTTCTGGTTCGGTGCTCCGCTCTCAACTCCGATGGAGGTCTGTTGCTTTCTTTGAAGTACTCTATCCTCAGTGATCCGTTGTTTGTGTTGGATAACTGGAATTACAACGACCAAACGCCATGTTCGTGGACCGGAGTCACGTGTACTGAAATCGGAGCTCCGGGCACGCCGGATATGTTTCGGGTCACCGGTTTGGTCCTCTCCAACTGTCAGCTTCTGGGTTCCATCCCAGAAGATCTCTGCACGATCGAACACCTTCAACGTCTTGATCTCTCCAACAATTTCTTCAATGGGTCGTTGCCCACTTCGCTCTTCAAAGCTTCTGAGCTCAGGGTGCTTTCTCTTGCCAACAATGTGATCTCCGGTGAGCTGCCGGAGTTCATTGGTGGTATGAAGAGTCTGCAGCTTCTCAACCTCTCCGACAACGCCTTGGCGGGTACGGTTTCAAAGAGTTTGACTGCTCTGGAGAATCTCACGGTAGTTTCATTGAGAAGCAACTACTTTTCGGGCGCTGTTCCTGGTGGATTCAATCTGGTTCAGGTTTTAGATCTGTCATCCAATCTTTTCAATGGGTCATTGCCCATAGATTTTGGCCAAATTCCAGAAACTGCAGCCTTGATTTATCAGAAACCGGCGTCGTTTGAAGGAAATCTGGATCTGTGCGGAAACCCGCTGAAGAAACTCTGCACAGTACCTTCTACGCAAGCTACTCCACCCAATGTAACCACAACCACGTCTCCTCCCGCGATTGCAGCCATACCCAGAACAACCGACTCAAGCCCAGTAACAAGCTCGCCTCAGACCCAGCAAGAGAGCGGGATGAATCCCGGCACAGTCGCAGGAATCGCTGTTGGAGACTTAGCAGGCATCGCTATTCTTGCCATGATCTTCATCTACGTTTACCAACTGAAGAAGCGAAAGAAACTCAACGACAACGAAAAGACGGACTCATTGAACAAACCCATTCCAGAGAAGAAAGAAACAACCCAAGCGTGGTCGTGCTTAACAAAACCAAAGAACGGCGAAGAAGAAGAGACCGAGACTGAGACGGAGACTGGCTCTGAGGGCCACCGCGATGACGGTAACAAAAAGGAGATGATGAAAAATGGGGAGGGCTCCGTGGTGACTGTGGACGGAGAGACGCAGCTGGAGCTCGAGACTCTGCTGAAGGCGTCTGCCTACATATTGGGAACCACTGGGGCGAGCATTGTGTACAAAGCTGTGCTGGAGGATGGAACCGCGTTGGCAGTGAGGAGGATCGGAGAGAGCCGAGTGGAGAAGTTCAAAGATTTCGAAAACCAGGTGAGGCTCATAGCCAAGCTCCGCCACCCAAATCTGGTTCGTGTTCGAGGGTTTTACTGGGGTTCAGATGAGAAGCTCATTATCTACGACTATGTCTCCAATGGCAGCCTCGCCAGCACCGGTCACAGAAAGATGGGGTCATCGCCGATTCATATGCCGCTGGAACTCCGGTTCAGGATAGCCAAAGGAGTGGCTCGAGGGCTAGCCTACATTCACGAGAAGAAGCACGTGCATGGCAATCTCAAACCCTCCAACATCCTCTTAACCCCTGAAATGGAACCAATCATCGCCGACTTCGGCCTCGACCGCTTTCTCTCCGGCGACTACACCCACAAAGATGACGCTTCAGGCGGCCATTTCAGCAGACAGCGGTCCACCACCTTTCACGACCACCCACAGGACTACCCCACGGCCGGCACCTCCGCCGGCATCCTCTCCCCGTACCATCCCCCGGAGTGGCTCGGGACCCTCAAGCCTAACCCCAGGTGGGACGTCTACTCGTTTGGAATCGTTCTGCTGGAGCTTCTAACGGGACGAGTGTTTCTGGACCGGGAGTTGGGTCAGTTGAAAGCCGGCGGGTCGGGGATGGAAGAGAGGGACCGGGTTTTGAGGATGGCGGACGTGGGTATAAGAGGTGACGTGGAAGGAAGGGAGGATGCCACGCTGGCATGCTTTAAATTAGGGTTTAACTGTGCTTCATCGGTCCCGCAAAAAAGACCCACCATGAAAGAAGCGCTTCAGATCCTGGAAAAGAATTCACCCACCTCACACTAA 2148 52.47 MSFNGDYLCSWWRITAFAFAFAFLLLVRCSALNSDGGLLLSLKYSILSDPLFVLDNWNYNDQTPCSWTGVTCTEIGAPGTPDMFRVTGLVLSNCQLLGSIPEDLCTIEHLQRLDLSNNFFNGSLPTSLFKASELRVLSLANNVISGELPEFIGGMKSLQLLNLSDNALAGTVSKSLTALENLTVVSLRSNYFSGAVPGGFNLVQVLDLSSNLFNGSLPIDFGQIPETAALIYQKPASFEGNLDLCGNPLKKLCTVPSTQATPPNVTTTTSPPAIAAIPRTTDSSPVTSSPQTQQESGMNPGTVAGIAVGDLAGIAILAMIFIYVYQLKKRKKLNDNEKTDSLNKPIPEKKETTQAWSCLTKPKNGEEEETETETETGSEGHRDDGNKKEMMKNGEGSVVTVDGETQLELETLLKASAYILGTTGASIVYKAVLEDGTALAVRRIGESRVEKFKDFENQVRLIAKLRHPNLVRVRGFYWGSDEKLIIYDYVSNGSLASTGHRKMGSSPIHMPLELRFRIAKGVARGLAYIHEKKHVHGNLKPSNILLTPEMEPIIADFGLDRFLSGDYTHKDDASGGHFSRQRSTTFHDHPQDYPTAGTSAGILSPYHPPEWLGTLKPNPRWDVYSFGIVLLELLTGRVFLDRELGQLKAGGSGMEERDRVLRMADVGIRGDVEGREDATLACFKLGFNCASSVPQKRPTMKEALQILEKNSPTSH* 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6078669 6081676 - Vvi3g620 Vvi3g620 784295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g620 715 MobiDBLite consensus disorder prediction 360 390 - -
Vvi3g620 715 ProSiteProfiles Protein kinase domain profile. 414 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g620 715 Gene3D Ribonuclease Inhibitor 153 269 IPR032675 -
Vvi3g620 715 Gene3D Transferase(Phosphotransferase) domain 1 490 714 - -
Vvi3g620 715 Pfam Leucine rich repeat 109 168 IPR001611 GO:0005515
Vvi3g620 715 MobiDBLite consensus disorder prediction 375 390 - -
Vvi3g620 715 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Vvi3g620 715 MobiDBLite consensus disorder prediction 573 587 - -
Vvi3g620 715 PANTHER OS04G0122200 PROTEIN 26 222 - -
Vvi3g620 715 PANTHER OS04G0122200 PROTEIN 222 712 - -
Vvi3g620 715 MobiDBLite consensus disorder prediction 573 594 - -
Vvi3g620 715 SUPERFAMILY Protein kinase-like (PK-like) 419 709 IPR011009 -
Vvi3g620 715 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 222 712 - -
Vvi3g620 715 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 26 222 - -
Vvi3g620 715 MobiDBLite consensus disorder prediction 259 299 - -
Vvi3g620 715 Gene3D Ribonuclease Inhibitor 36 152 IPR032675 -
Vvi3g620 715 Gene3D Phosphorylase Kinase; domain 1 383 489 - -
Vvi3g620 715 Pfam Protein kinase domain 420 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g620 715 CDD STKc_IRAK 420 709 - -
Vvi3g620 715 SUPERFAMILY L domain-like 39 251 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g620 Vvi7g1008 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76577 PF00069 Pkinase 2.50E-31 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g620 - - vvi:104877300 1198.34