Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g624 ATGGGATTCCGTTTTGTCAGTTCAAAATTAGGGACTGAATGGGTGACCGCCATGTGTAAAAGGGCGGTTGGGGGTTTGGAACCTGATTCAACAATGGAGGCTTTGCAGAACGAAGCGGATCGGGTCAAGGGTCCATGGAGTCCCCAAGAAGACCAAGCTTTGCAGTGTCTCGTGAAGCGTTACGGTGCTAGGAACTGGTCTCTGATAAGCCGGTGGAGCACCGACCATTCACGCCGGAGGAGGACCGGAGAATCATTGAAGCCCACGCAAAGTACGGAAATAAGTGGGCGACGATCGCGAGGATGCTCAATGGCCAGGCAATCGAGCGGTGGCGGCCCCTCGATGCCAGCAACGGGGCTTTGCTTAAGCCCTGGCAGTCCTACTGGATCTGATGTTAGCGACACTGGCTTTCCCGTAGTTTCTTCTCCAAATCTGTATCGACCTGTGGCAAGAACTGGAGCGGTCCAAGTGCCTCCTCAGCAGTTTGAGCCATCCTCGAAGAAAGACGATCCTCCAACGGCGCTCACCCTCTCCCTCCCTGGAACTGAGACCTACGAGAACGAGTACGAGTCTCCACCTCTCGACTCTGCTCCTCGCCACAACAAGCTGGCGTCTCCAGAGAAGCAACCGGCTCTGACCTTCGCCATGCCGGAGAACCCTGAGCCGATGACCTTTGGTTCGGACTTTTTCCTTATGATACAAGACATGATCAAAACTGAAGTGAAGAACTACATGTCAGGACTTGAAATCAACGAGATATGCTCGCAGAAAAGTTATCTATTAACTAGAACCGCCTTTTTCCTTCTATTTAAACAATTGTTCACACAGTTGATTACAACTTATAAGACAATCCTTCTCTCATTTATTTTCCCCAATTTTTGA 882 50.68 MGFRFVSSKLGTEWVTAMCKRAVGGLEPDSTMEALQNEADRVKGPWSPQEDQALQCLVKRYGARNWSLISRWSTDHSRRRRTGESLKPTQSTEISGRRSRGCSMARQSSGGGPSMPATGLCLSPGSPTGSDVSDTGFPVVSSPNLYRPVARTGAVQVPPQQFEPSSKKDDPPTALTLSLPGTETYENEYESPPLDSAPRHNKLASPEKQPALTFAMPENPEPMTFGSDFFLMIQDMIKTEVKNYMSGLEINEICSQKSYLLTRTAFFLLFKQLFTQLITTYKTILLSFIFPNF* 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6146662 6148747 + Vvi3g624 Vvi3g624 784299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g624 293 CDD SANT 45 87 IPR001005 -
Vvi3g624 293 MobiDBLite consensus disorder prediction 157 203 - -
Vvi3g624 293 MobiDBLite consensus disorder prediction 121 139 - -
Vvi3g624 293 PANTHER MYB PROTEIN-RELATED 103 245 - -
Vvi3g624 293 PANTHER MYB PROTEIN-RELATED 37 71 - -
Vvi3g624 293 MobiDBLite consensus disorder prediction 75 139 - -
Vvi3g624 293 Gene3D - 35 97 - -
Vvi3g624 293 Pfam Myb-like DNA-binding domain 43 71 IPR001005 -
Vvi3g624 293 ProSiteProfiles Myb-like domain profile. 38 87 IPR001005 -
Vvi3g624 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 71 IPR017930 -
Vvi3g624 293 SUPERFAMILY Homeodomain-like 40 86 IPR009057 -
Vvi3g624 293 MobiDBLite consensus disorder prediction 87 114 - -
Vvi3g624 293 PANTHER TRANSCRIPTION FACTOR MYB73 37 71 - -
Vvi3g624 293 PANTHER TRANSCRIPTION FACTOR MYB73 103 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g624 K09422 MYBP; transcription factor MYB, plant - vvi:100267575 321.242
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g624 Vvi18g713 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g624 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag0999 Cone10ag1019 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024332 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14674 PF00249 Myb_DNA-binding 4.30E-07 CL0123 Vvi TF