Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g63 ATGGTCAAATCTACGGAAGATGGTGAGAAGAAGAATTTGAATAAAAGGCTCAAAGATGTTGAAATCAGTGTTCCAATAGTGTATGGTAACATCGCATTTTGGCTTGGTAAAAAGGCAAGCGAGTATCAGTCCCATAAGTGGACTGTTTATGTTCGTTCTCCAACAAATGAGGATCTGGGTGTAGTGATAAAGCGTGCCGTGTTTCAATTGCATTCGAGTTTCAATAATCCCACAAGGGTTGTGGAGTCACCACCATTTGAGTTGTCGGAAGCGGGATGGGGTGAATTTGAAATCGCTATTACGCTTTATTTCCAGAGTGATGTTTGTGATAAGCCATTGAACTTATATCATCATTTAAAGTTGTACCCAGAGGATGAATCTGGACCCATGTCGGCAAAGAAACCTGTTGTTGTAGAATCCTATGATGAAATTGTTTTCTCCGAGCCTTCAGAAGGTTTCTTTGCTCGTGTGCAGAATCATCCAGCCGTTATTGTGCCCAGGCTACCTGCTGGTTTTAGTTTACCACCACCTGTACCTCTGGAGGATGTAAATGAAAAGAAGAGGTTTGACTCAAAAGACAATCCTCTAAACCAGTGGTTCAAGAATTTTTCAGAAGCAGATGAACTACTACAACTTGCAGCAGCTCGGCAGCAGGTGCAAGCTCATATCGCTAAACTCAGAAGACAGATAAGTGTAATTGATGGGCAGCATCAACAGTTGAAACCCACATCTGACCAGTGA 741 42.24 MVKSTEDGEKKNLNKRLKDVEISVPIVYGNIAFWLGKKASEYQSHKWTVYVRSPTNEDLGVVIKRAVFQLHSSFNNPTRVVESPPFELSEAGWGEFEIAITLYFQSDVCDKPLNLYHHLKLYPEDESGPMSAKKPVVVESYDEIVFSEPSEGFFARVQNHPAVIVPRLPAGFSLPPPVPLEDVNEKKRFDSKDNPLNQWFKNFSEADELLQLAAARQQVQAHIAKLRRQISVIDGQHQQLKPTSDQ* 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 755205 760330 - Vvi3g63 Vvi3g63 783738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g63 246 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 14B 2 244 - -
Vvi3g63 246 CDD YEATS_TFIID14_like 22 153 - -
Vvi3g63 246 Pfam YEATS family 44 123 IPR005033 GO:0006355
Vvi3g63 246 Coils Coil 209 229 - -
Vvi3g63 246 PANTHER YEATS DOMAIN 2 244 IPR005033 GO:0006355
Vvi3g63 246 ProSiteProfiles YEATS domain profile. 16 160 IPR005033 GO:0006355
Vvi3g63 246 Gene3D YEATS domain 17 169 IPR038704 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g63 K11341 YEATS4, GAS41, YAF9; YEATS domain-containing protein 4 - vvi:100247042 497.664
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g63 Vvi4g1100 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g63 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007957 0 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 3 1 2 36