Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g633 ATGGGTTCTGAATCAAAGCTAGTTCATGTATTTTTGGTCTCCTTCCCTGGACAAGGGCATGTTAACCCTTTGCTTAGGTTGGGGAAGCGTCTGGCTTCAAAGGGCTTGCTTGTGACTTTCACTACCCCAGAAAGCATTGGGAAACAGATGAGGAAAGCCAGTAATATCACTGACCAACCAACGCCGGTCGGAGATGGTATGATCAGGTTCGAGTTTTTTGAAGATGGGTGGGACGAGAACGAGCCCAAGCGCCAAGACCTCGACTTGTACTTGCCACAGCTGGAGCTCGTGGGCAAGAAGATTATTCCTGAAATGATCAAGAAGAACGCTGAGCCCGAAATCGATGTTCAACTGCCATGTACGCCTCTCTTGAAGTATGATGAAGTCGCTAGTTTCCTGTACCCGACCACTCCATATCCTTTCCTGAGGAGAGCCATCTTAGGCCAGTACAAGAACCTGGACAAGCCCTTCTGTATATTGATGGATACATTCCAAGAGCTGGAACCCGAAGTCATCAAATACATGTCCAAGATCTGCCCAATCAAGCCTGTAGGACCTCTATACAAGAACCCCAAAGTGCCAAACGCCGCTGTCCGTGGCGACTTCATGAAGGCAGTTGCAGAGGGCGGCTCCTCGGATCGGAATCTTCAGGAGTTTGTTGATGAAGTCAGTAGGATGAGTATGGTGCTGGTTTGCCAGTCAAACAAAATTTGA 714 48.6 MGSESKLVHVFLVSFPGQGHVNPLLRLGKRLASKGLLVTFTTPESIGKQMRKASNITDQPTPVGDGMIRFEFFEDGWDENEPKRQDLDLYLPQLELVGKKIIPEMIKKNAEPEIDVQLPCTPLLKYDEVASFLYPTTPYPFLRRAILGQYKNLDKPFCILMDTFQELEPEVIKYMSKICPIKPVGPLYKNPKVPNAAVRGDFMKAVAEGGSSDRNLQEFVDEVSRMSMVLVCQSNKI* 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6282000 6283513 + Vvi3g633 Vvi3g633 784308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g633 237 Gene3D Glycogen Phosphorylase B; 112 204 - -
Vvi3g633 237 Gene3D Glycogen Phosphorylase B; 2 111 - -
Vvi3g633 237 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 4 111 - -
Vvi3g633 237 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 113 196 - -
Vvi3g633 237 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 204 227 - -
Vvi3g633 237 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 9 232 - -
Vvi3g633 237 PANTHER GLYCOSYLTRANSFERASE 113 196 - -
Vvi3g633 237 PANTHER GLYCOSYLTRANSFERASE 4 111 - -
Vvi3g633 237 PANTHER GLYCOSYLTRANSFERASE 204 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g633 - - K23279 vvi:100247052 381.333
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g633 . . . . . . Bma05g00532 . Cmo19g00593 Cmo11g01394 . . . . . . Cpe15g00465 Bhi05g01106 . . . . . . Cla02g00640 . . . . . . . . . . Lsi03g00535 Csa07g00718 . Cme01g00089 . . . . . . . . . . . Cma11g01721 Cma19g00578 Car11g01120 Car19g00438 . . . . . . . . . . . . . . . . . . Chy01g00097 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000463 3 5 1 1 1 4 5 5 5 4 5 5 4 3 3 5 5 4 4 5 4 3 4 5 5 5 3 5 4 3 118