Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g641 ATGACGTCATCTGGATTCCGGCCCCTTGACGACAAGTCTCTCGTAGAGTACATAAAGGCCACGCCTGCTCTCTTCTCCAAGCTTGCAAACCAGCTCCATGGATTGCAGATCAAAGAAGTGGGCGACGGCAATCTCAACTTCGTCTACGTCGTCATCTCTTCCGCCGGCTCCTTCGTCATCAAACAGGCGTTGCCGTACATACGTAGTATAGGGGAATCGTGGCCGATGACGAAGGACCGGGCGTATTTTGAAGCGACGGCTTTGAGAGAGCAGCGTCGCTGGTGCTCCAATCATGTGCCGGAGGTTTATCATTTTGATAGGGAAATGGCTGTAATCGGTATGAGGTACTTGGAGCCTCCGCATATAATTCTTAGAAAGGGCCTGATTGCTGGAATTGAGTACCCGTTGCTTGCAGAACACATGTCGGAGTTCATGGCGAGGACTCTTTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGTTTTCTCTGATCCATACAAAGTATCTCAGTATAATTGGTGGACTTCCCCTTATCTTGACCGTGATGCCGAGGCAGTTCGAGAGGATAACATTTTGAAGCTTGAAGTTGCTGAGTTGAAATCTATGTTCTGTGAGAGATCGCAAGCCCTAGTACATGGAGATCTTCATACTGGTTCAGTTATGGTTACCCCTGATTCGACTCAAGTTATAGATCCAGAATTTGGCTTTTATGGACCAATGGGGTTTGATATAGGCGCTTTTTTAGGAAACTTGATTTTGGCATACTTTGCACAAGATGGGCATGATGATCAAGTGAATGATAGAAAAACATATAAAAAATGGATTTTGAAGACAATAGAACAGACTTGGAATTTTTTCCACAAAAAATTTACTGCATTATGGAATGAACACAGGAATGGCTCTGGTGAGGCGTATCTTCCAGAAATTTATAATAACCCTGAACTTCAGCTTCTTACACAAAAGAAATACATGCAAGATTTGTTGCATGACACCCTCGGATTTGGTGCTGCCAAAATGATAAGGAGAATTGTTGGTGTAGCACATGTTGAGGATTTTGAATCAATTGTTGATGCTAGCAAGCGAGCTAACTGTGAGAGACAGGCACTTGTATTTGCAAAGATGCTTTTGAAGGAAAGGAGAAAATTTCAGGCTATCACTGAAGTTGTTTCAGCCATTCAGCAAGAACAATCATGA 1260 43.57 MTSSGFRPLDDKSLVEYIKATPALFSKLANQLHGLQIKEVGDGNLNFVYVVISSAGSFVIKQALPYIRSIGESWPMTKDRAYFEATALREQRRWCSNHVPEVYHFDREMAVIGMRYLEPPHIILRKGLIAGIEYPLLAEHMSEFMARTLFFTSLLYHDTTEHKRAVAEFCGNVELCRHTGQVVFSDPYKVSQYNWWTSPYLDRDAEAVREDNILKLEVAELKSMFCERSQALVHGDLHTGSVMVTPDSTQVIDPEFGFYGPMGFDIGAFLGNLILAYFAQDGHDDQVNDRKTYKKWILKTIEQTWNFFHKKFTALWNEHRNGSGEAYLPEIYNNPELQLLTQKKYMQDLLHDTLGFGAAKMIRRIVGVAHVEDFESIVDASKRANCERQALVFAKMLLKERRKFQAITEVVSAIQQEQS* 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6391620 6395007 + Vvi3g641 Vvi3g641 784316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g641 419 PIRSF MTRK 1 419 IPR009212 GO:0009086|GO:0046522
Vvi3g641 419 PANTHER METHYLTHIORIBOSE KINASE 2 416 - -
Vvi3g641 419 TIGRFAM MTRK: S-methyl-5-thioribose kinase 38 412 IPR009212 GO:0009086|GO:0046522
Vvi3g641 419 Pfam Phosphotransferase enzyme family 37 270 IPR002575 -
Vvi3g641 419 Gene3D - 121 418 - -
Vvi3g641 419 Gene3D Phosphorylase Kinase; domain 1 1 120 - -
Vvi3g641 419 PANTHER METHYLTHIORIBOSE KINASE 2 416 - -
Vvi3g641 419 SUPERFAMILY Protein kinase-like (PK-like) 3 415 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g641 K00899 mtnK; 5-methylthioribose kinase [EC:2.7.1.100] - vvi:100264709 853.973
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g641 . . . Bda08g00661 Bpe07g00258 . . Bma12g00263 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006086 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 1 1 2 2 2 2 38