Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g647 ATGAGCCTCAATTCATCTCGCTCCGCCAACTCCGGCGAAAGGTCAAAGAGAAGCCTGAACTCAACCTCTTCAAACCCTTCCAACAATAGCGGGAAGAAGAGAAAAACCGGAAACCAGAAAACCCTAGGCATGGCTTGGGGCTCCAATTCTCGATCATCTTCCCGCTCTTCCTTCCGTAATTCTCCCTTCTCCGATTTCGGCAGCTACATGGTGGAGAAGAACAGGAAACTTCAGAACCAGTTTGACGCTGGTGCTTCAAGTTCTTCTCACAGTGCTTTGAGTTCTGGGAAGCCTATATTTCATGGAGTTTCCGTTTTTGTTGATGGGTTTACCATTCCTTCTAGTCAGGAGCTCCGAGGCTATATGATGAGGCATGGAGGACATTTTGAAAATTATTTTTCGAGGCATCGAGTTACTCATATCATCTGCAGTAATCTGCCTGACAGTAAAATTAAGAATCTGAGGTCATTCAGTGGTGGACTTCCAGTTGTGAAGCCTACATGGGTACTGGATTCTGTTGCTGCTAATAAGCTATTGAGTTGGATTCCTTACCAACTTGACCAGCTTGCTAATGAAACTCGTAACCAGCCAAAGTTGTCTGCCTTCTTTGCTCTAAAAAGCATCCCAGTCTTTGAAGATGCTGTAACTCATACTACTTATCCATTAGTACCTGAAACTGAGGACTCAGTGCAATCAAGTGGAGAAATTGATGATCACCAATGTGAGAACACCAATGAAACAATAATTGAGAAGCCATTTTCCAATGATGAAAAATCTTCTGAAATTAAAATGGAAGAACAGAGTTTTTCTAATCAAGAAGAAGAGTGTAGCATAAAAAATGAACTTCAGTCTAGTCCACATCGACCTTCTGCTTCAGTTAGTAGCTACTACTTGGACAATGCAAGAAAAGAATCATCAAGTACAACAGTTGTTGGGTGTTCTAACAAGGGTCATTCAACTCTTGAAGATCCTAATTTTGTCGAAAATTATTTCAAGTACTCAAGGCTGCACTTTATAGGAACCTGGAGAAACCGATATCAGAAGCGTTTCCCCAGATTGTCTAATGAGTTCAAGCATACAAGTTCAGACCTTAATGCTTCTGGTGTTTCCCAGAAGAATGTTATCATCCATATGGACATGGATTGCTTTTTTGTCTCAGTGGTGATCAGGAACAATCCAGAATTACAGGATAAGCCTGTAGCTGTGTGCCATTCAAACAATCCAAAAGGAACTGCTGAAATTTCATCTGCAAACTACCCTGCTCGAGATTATGGAGTAAAGGCTGGTATATTTGTTAGAGATGCTAAAGCTCTTTGTCCTCACCTTGTCATTTTTCCTTACAACTTTGAAGCTTATGAGGAGGTAGCTGATCAGTTTTATAACATATTGCACAAGCACTGCAACAAAGTGCAGGCTGTAAGCTGTGATGAAGCCTTTTTAGAAGTTATGGACTCAAAAGAGGGGGATCCTGAGCTTCTAGCTTCAATCATAAGAAAAGAGATTTTTGAGACCACAGGATGCACTGCAAGTGCTGGGATAGCCGGGAATTTGCTTATGGCTCGCCTGGCCACGAGAAGTGCCAAACCAAATGGTCAGTGTTACATCCCTGTTGATAAGGTGGATGATTATTTACATCAACTTCCAATCAAGGCACTTCCAGGAATTGGGCATGTTTTGGAGGAAAAGTTGAGAAGGAGAAAAGTTCACACCTGTGGCCAGTTGCGTATGATTTCCAAGGAATCTCTTCAAAGGGACTTTGGTACGAAAACTGGTGATATGCTGTGGAATTATTGTAGAGGAGTGGATAACCGGGTGGTTGGAGTGATTCAGGAAAGCAAGTCCATTGGTGCTGAAGTAAATTGGGGTGTGAGGTTCAATGATTTGAAAGATAGTCGCCATTTTCTTGTGAATCTTTGCAAGGAAGTGACATTACGCTTAAAGGGATGTGGAGTGCAAGGGCGTACTTTTACACTGAAGATGAAGAAGAGAAGAAAAGATGCTGGGGAGCCTGCAAAGTATATGGGTTGTGGAGATTGTGAAAATCTTAGCCACTCTATGACGGTCCCACTTGCTACTGATGATGTGGACGTGATTCAAAGGATAGCCACACAGCTCTTTGGGTTTTTCCACATAGATGTCAAGGATATCCGGGGTATTGGCTTGCAGGTTTCGAGGCTTGAAAATGCAGATACTGCTAAGCAAGGGCATCAAAGAATCTCCATAAGATCTTGGCTCACCTCTGCCCCTGCAACCAATGAAGAACTATGTAAAACCAGTTGTCTAGTAAGAAAGGAGAGGGCTGTTGCAGATGGTGAGAAACAGAGCACTGATATAAGTTTGGGTCAATTGTCGAATGATTCCAAGAGGCCTTCTTTGCAAATGAGCCCTAGTTCTTCCAACAATGAAGCTCCTTTAAACCAGGTTTCTGAACTGCCAGCATTGTGCGATCTTGATATGGGAGTTTTAGAGAGTCTTCCTCCAGAACTCCTTTCAGAAATAAATGATATGTATGCGGGGAAGTTGTCTGATTTCATCAGGAAAAGGAAAGGAAAAAATGAAAATTTATTGCATGCTTCACACTCCTCTTTTAAACATACAATTGTTTTAATTCTCAAGGTGGAGAAAACTCTGGACAGAGAAATTGCGACTGAGAATTCATTGTTACAATCATCTGAAGTAGAGAAGGAAGTGTCTGTTTCTGGGGCAGTATCCTTAAATGTTGTTGATCCCGCTTCAGCGCTTGAAAAAAGTGATCTAATGCCTTCATCTCTAAGTCAAGTAGATATCTCAGTGTTACAACAGTTGCCCAAGGAAATGTGGGTCGACATACTTGAGCAGCTTCCTGTTCACAGGAAGCCAGAACATTCCTCAAGTGCTGCCTTGGATCCTCTTATTGCCAATGCTCAGGAATCATTATGTTTCAAGCATACTGAGAATAATTCTAAATCAGTGGATTCTGTTTTGGGAAACAACCTTTGGATTGGGAATCCTCCACAGTGGGTCGACAAGTTCAAAGTTAGCAATTGCTTGTTGTTGAACATTCTGGCAGAGATGTATTACAGATCAGGGTCAACTGGCTGTTTATCTTCTATTCTGCAGTGCACTCTTTCTAAGTTTCTGTTGCCTCTAGATGCAAGTAGTGATGGATGGGATGAAACAATTAGTAGCTTGTGTGATCTTCTTAAGCAATATATCAAAATAAAGATAGAATCAGATATTGAAGAGATATATGTTTGCTTTCGTCTTCTTAAAAGGTTCACAATGAAGTCAAAACTTTTTTTAGAGGCATACAATGTTGTTTTCCCTTATCTCCAGGCTTCTGCTGGTGAGAATTATGGAGGAAGCTTGCAGCTTTCACATGCAAAGGAATAG 3372 41.46 MSLNSSRSANSGERSKRSLNSTSSNPSNNSGKKRKTGNQKTLGMAWGSNSRSSSRSSFRNSPFSDFGSYMVEKNRKLQNQFDAGASSSSHSALSSGKPIFHGVSVFVDGFTIPSSQELRGYMMRHGGHFENYFSRHRVTHIICSNLPDSKIKNLRSFSGGLPVVKPTWVLDSVAANKLLSWIPYQLDQLANETRNQPKLSAFFALKSIPVFEDAVTHTTYPLVPETEDSVQSSGEIDDHQCENTNETIIEKPFSNDEKSSEIKMEEQSFSNQEEECSIKNELQSSPHRPSASVSSYYLDNARKESSSTTVVGCSNKGHSTLEDPNFVENYFKYSRLHFIGTWRNRYQKRFPRLSNEFKHTSSDLNASGVSQKNVIIHMDMDCFFVSVVIRNNPELQDKPVAVCHSNNPKGTAEISSANYPARDYGVKAGIFVRDAKALCPHLVIFPYNFEAYEEVADQFYNILHKHCNKVQAVSCDEAFLEVMDSKEGDPELLASIIRKEIFETTGCTASAGIAGNLLMARLATRSAKPNGQCYIPVDKVDDYLHQLPIKALPGIGHVLEEKLRRRKVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNRVVGVIQESKSIGAEVNWGVRFNDLKDSRHFLVNLCKEVTLRLKGCGVQGRTFTLKMKKRRKDAGEPAKYMGCGDCENLSHSMTVPLATDDVDVIQRIATQLFGFFHIDVKDIRGIGLQVSRLENADTAKQGHQRISIRSWLTSAPATNEELCKTSCLVRKERAVADGEKQSTDISLGQLSNDSKRPSLQMSPSSSNNEAPLNQVSELPALCDLDMGVLESLPPELLSEINDMYAGKLSDFIRKRKGKNENLLHASHSSFKHTIVLILKVEKTLDREIATENSLLQSSEVEKEVSVSGAVSLNVVDPASALEKSDLMPSSLSQVDISVLQQLPKEMWVDILEQLPVHRKPEHSSSAALDPLIANAQESLCFKHTENNSKSVDSVLGNNLWIGNPPQWVDKFKVSNCLLLNILAEMYYRSGSTGCLSSILQCTLSKFLLPLDASSDGWDETISSLCDLLKQYIKIKIESDIEEIYVCFRLLKRFTMKSKLFLEAYNVVFPYLQASAGENYGGSLQLSHAKE* 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6479124 6503918 - Vvi3g647 Vvi3g647 784322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g647 1123 CDD BRCT_Rev1 99 186 - -
Vvi3g647 1123 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 611 724 IPR036775 GO:0003684|GO:0006281
Vvi3g647 1123 MobiDBLite consensus disorder prediction 252 272 - -
Vvi3g647 1123 Gene3D - 324 360 - -
Vvi3g647 1123 Coils Coil 255 275 - -
Vvi3g647 1123 PIRSF REV1 49 1111 IPR012112 GO:0003684|GO:0006281|GO:0016779|GO:0042276
Vvi3g647 1123 SUPERFAMILY BRCT domain 54 201 IPR036420 -
Vvi3g647 1123 MobiDBLite consensus disorder prediction 273 293 - -
Vvi3g647 1123 Pfam impB/mucB/samB family C-terminal domain 612 732 IPR017961 GO:0003684|GO:0006281
Vvi3g647 1123 Pfam impB/mucB/samB family 379 524 IPR001126 GO:0006281
Vvi3g647 1123 Gene3D BRCT domain 90 186 IPR036420 -
Vvi3g647 1123 MobiDBLite consensus disorder prediction 772 804 - -
Vvi3g647 1123 Pfam BRCA1 C Terminus (BRCT) domain 98 172 IPR001357 -
Vvi3g647 1123 Gene3D - 375 535 IPR043128 -
Vvi3g647 1123 MobiDBLite consensus disorder prediction 252 293 - -
Vvi3g647 1123 Gene3D - 547 601 - -
Vvi3g647 1123 Gene3D - 392 446 - -
Vvi3g647 1123 Gene3D - 611 734 IPR036775 GO:0003684|GO:0006281
Vvi3g647 1123 ProSiteProfiles UmuC domain profile. 375 556 IPR001126 GO:0006281
Vvi3g647 1123 ProSiteProfiles BRCT domain profile. 95 186 IPR001357 -
Vvi3g647 1123 MobiDBLite consensus disorder prediction 1 60 - -
Vvi3g647 1123 CDD PolY_Rev1 326 726 - -
Vvi3g647 1123 MobiDBLite consensus disorder prediction 775 804 - -
Vvi3g647 1123 PANTHER DNA REPAIR PROTEIN REV1 33 1114 - -
Vvi3g647 1123 SMART BRCT_7 97 176 IPR001357 -
Vvi3g647 1123 SUPERFAMILY DNA/RNA polymerases 370 606 IPR043502 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g647 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-] - vvi:100247553 2104.72
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g647 . . . . . . . . Cmo19g00586 . . . . . . . Cpe15g00458 . . . . . . . Cla02g00651 Cam02g0684 Cec02g0698 Cco02g0718 Clacu02g0692 Cmu02g0687 Cre02g1006 . Cone8ag1100 . . Lsi03g00548 Csa07g00711 . . . . . . . . Bma03g01373 . . . . . Cma19g00572 . Car19g00431 . . . . . . . . . . . . . . . . . . Chy01g00104 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010766 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 3 1 1 32