Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g648 ATGCTGTGCTTTGGGGGTTATCAGAGTGAAGTGGGGTTTGCTGAACCCACCAAAACTCCTCAGAAATCTGGAGTTACATGCAGTGATTCCTCCTCTGCTTCTTCCACCAATAACACCAACATCAACAAAGCCTCCAAATCTAATAAAAAACGAAATGGGTCAGGCAATATGTCGGTGCCAACCTCGAGCGGCCTCGCCAAAGCTCCGGCGGGAGGTCAGAGAAACTCTAAGAAGACCAAATCGGAGAATCCCACGTCCGGCGGCCATGTCAAGGTAAAGAAGGAGAAACTAGGAGAGAGAATCACAGCATTGCAGCAGCTAGTTTCTCCTTTTGGCAAGACGGATACAGCTTCAGTTCTTCATGAAGCGATGGGTTATATCAGGTTTCTGCAGGACCAGGTTCAGGTGTTGTGTTCTCCATACTTGCAAACCCTGCCTTCATCGGCCCACATGTCTGAGGGCGGAGAAAACGGAGAAGAGAAGTCTAGCAAAGATCTGAGGAGCAGGGGCCTGTGTCTGGTCCCAGTCGAATGCACAGAACACGTGGCTAACAACAATGGTGCTGATTACTGGTCTCCTGCCATGGCCAACACCTCATCCAAGAAGTGA 609 49.92 MLCFGGYQSEVGFAEPTKTPQKSGVTCSDSSSASSTNNTNINKASKSNKKRNGSGNMSVPTSSGLAKAPAGGQRNSKKTKSENPTSGGHVKVKKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIRFLQDQVQVLCSPYLQTLPSSAHMSEGGENGEEKSSKDLRSRGLCLVPVECTEHVANNNGADYWSPAMANTSSKK* 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6507404 6509263 - Vvi3g648 Vvi3g648 784323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g648 202 MobiDBLite consensus disorder prediction 147 166 - -
Vvi3g648 202 Gene3D - 91 149 IPR036638 GO:0046983
Vvi3g648 202 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 186 - -
Vvi3g648 202 MobiDBLite consensus disorder prediction 10 96 - -
Vvi3g648 202 MobiDBLite consensus disorder prediction 14 63 - -
Vvi3g648 202 CDD bHLH_AtbHLH_like 91 137 IPR045239 -
Vvi3g648 202 SMART finulus 90 136 IPR011598 GO:0046983
Vvi3g648 202 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 130 IPR011598 GO:0046983
Vvi3g648 202 PANTHER BASIC HELIX-LOOP-HELIX (BHLH) DNA-BINDING SUPERFAMILY PROTEIN-RELATED 17 186 - -
Vvi3g648 202 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 91 143 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g648 - - - vvi:100249018 359.762
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g648 Vvi4g1030 ECH
Vvi3g648 Vvi18g990 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g648 . . . . . Bpe12g00300 . . Cmo19g00585 . . . . . . . Cpe15g00457 . . . . . . . Cla02g00654 Cam02g0688 Cec02g0700 Cco02g0721 Clacu02g0694 Cmu02g0690 Cre02g1007 . Cone8ag1099 . . Lsi03g00549 Csa07g00710 . Cme01g00096 . . Bda15g00841 . . . . . . . . . Cma19g00571 . Car19g00430 . . . . . . . . . . . . . . . . . . Chy01g00105 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010226 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 32