Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g651 ATGGAAGATGGGGAGTGGGTTCTGGTGAGGCCACCCACAGAAATCGAATGCTGGAGCCCCGGATGGGGCGGGGGCGAGGATGAGGGCGGCTCCTCTGACCCGCTCAAGGTTAGATTTTTTGGACCGGCCAAGCACTGGACCGACGCTCTTCCCATCGGTAATGGCCGCCTCGGGGCTATGGTCTGGGGCGGCGTCGCATCGGAGACGCTTCAGCTTAATGAGGGCACCCTTTGGACTGGGACTCCTGGAAACTACACAAACCCAGATGCTCCAAAAGCGCTATCAGAAGTCAGAAAACTTGTTGATAATGGTGACTATGTTGCAGCTACTGAAGCAGCAGTCAAGTTGTCAGGGAATCCTTCCGATGATGAATTGCCAAGTTTACTACTTGATTCTTTCTTTGATTGTGATCATGTTGGATTAGAGGTTTGTGTTAAATATGCTCCATTACTAATGGGATACCTGAAGTTTAATTTTGGTGTTTATCAGCTTCTAGGTGATATTAATCTAGAATTTGAGGATTCTCATCTTGCATATGCTGAAGAAACATACAGTAGAGAGCTAGACTTGGATACTGCAACAGTAACGATAAAATATTCTGTGGGTGATGTAGAGTACACTAGAGAGCATTTTGCCTCTTATCCAGATCAGGTGATTGTGACGAAGATCTCTGGAAGCAAACCAGGGTCAGTTTCTTTTACAGTATCACTAGACAGCAAAATTCCACCAAAAGTGGGAGTGATAAATGTTTTGGATGATAAGAAACTGAAGGTTGAAGGTTCAGATTGGGCTGTTTTTACATTGAAGTCAATAGGAAACTTTTCATATTCTGATCTTTATGCACGCCATTTGAATGACTATCAAAACCTTTTTCATCGAGTTTCACTACAGCTTTCAAAAAGTTCCAAAAGTGTTATGAACAGAGTTTCAACTGCAGCCAGGGTGAAATCTTTTGGAACTGATGAAGATCCTTCATTAGTGGAGCTTCTGTTCCAGTATGGTCGATATTTGCTCATCTCTTGTTCTCGACCTGGAAGTCAGCCGGCAAACCTACAGGGAATTTGGAACAAGGATATTGAGCCAGCATGGGATGGGGCTCCTCACTTGAACATAAATCTTCAAATGAATTACTGGCCTTCCCTTCCATGCAACCTTAGCGAGTGCCAAGAACCTTTATTTGATTACATGTCCTCTCTTTCAATCAATGGGAGTAAAACTGCAAAAGTGAACTACGAAGCTAGTGGTTGGGTTACACATCAAGTGTCTGATATATGGGCAAAAACATCACCAGATCGAGGCCAGGCTGTGTGGGCATTATGGCCAATGGGTGGAGCTTGGCTTTGTACCCATCTATGGGAACATTATACTTTCACAATGGACAAGGATTTTCTGAAAAATAAGGCATATCCCTTACTAGAAGGATGTGCAAGATTTCTCTTGGACTGGTTGATTGAAGGACGTGGAGGATATCTGGAAACCAATCCATCAACTTCTCCAGAACATATGTTTATTGCTCCAGATGGTAAGCCTGCTAGTGTGAGCTACTCAACAACCATGGACATTGCAATCATAAGAGAAGTTTTCTCCGCAGTAGTTTCTGCTGCTGAGGTGCTGGGAAAAAATGAGGATGAGCTCGTTCAGAAAGTCCGTCAAGCTCAACCAAAACTTCCTCCAACAAAAATTGCTAGAGATGGTTCCATTATGGAATGGGCACAAGATTTTGAGGACCCAGAGGTGCATCATCGACATGTATCCCATCTATTTGGCCTATATCCAGGGCACACAATAACAGTAGAGAAAACCCCGGACCTTTGTAAAGCTGTGGACTATACCCTCTATAAAAGAGGGGAGGACGGTCCAGGATGGTCAACTACATGGAAAACAGCTCTGTGGGCACGTCTCCACAACAGTGAGCATGCATATAGGATGGTCAAGCATTTATTTGACCTGGTGGATCCTGCTCGTGAAGCTGATTTTGAAGGTGGACTATACAGTAACTTGTTTACTGCACATCCTCCTTTCCAGATTGATGCCAACTTCGGTTTCTGTGCAGCAGTTGCAGAAATGATTGTTCAGAGCACCTCAAAAGACCTCTATTTGCTCCCTGCTCTTCCCCGGGACAAATGGGCGAATGGTTGTGTCAAAGGATTGAAGGCACGTGGTGGTGTTACAGTCAATGTATGCTGGAAAGAAGGAGAACTTCACCAGATTGGGGTGTGGTCAAAAGACCAGAATTCTACTAGAAGATTACATTATAGAGGAAGTATAGTAACAGCGAAAATGTTGGCTGGCAGAGTCTACACATTCGATAGGCAGTTAAAATGTGTGAAAACATACACACTCTGA 2346 44.16 MEDGEWVLVRPPTEIECWSPGWGGGEDEGGSSDPLKVRFFGPAKHWTDALPIGNGRLGAMVWGGVASETLQLNEGTLWTGTPGNYTNPDAPKALSEVRKLVDNGDYVAATEAAVKLSGNPSDDELPSLLLDSFFDCDHVGLEVCVKYAPLLMGYLKFNFGVYQLLGDINLEFEDSHLAYAEETYSRELDLDTATVTIKYSVGDVEYTREHFASYPDQVIVTKISGSKPGSVSFTVSLDSKIPPKVGVINVLDDKKLKVEGSDWAVFTLKSIGNFSYSDLYARHLNDYQNLFHRVSLQLSKSSKSVMNRVSTAARVKSFGTDEDPSLVELLFQYGRYLLISCSRPGSQPANLQGIWNKDIEPAWDGAPHLNINLQMNYWPSLPCNLSECQEPLFDYMSSLSINGSKTAKVNYEASGWVTHQVSDIWAKTSPDRGQAVWALWPMGGAWLCTHLWEHYTFTMDKDFLKNKAYPLLEGCARFLLDWLIEGRGGYLETNPSTSPEHMFIAPDGKPASVSYSTTMDIAIIREVFSAVVSAAEVLGKNEDELVQKVRQAQPKLPPTKIARDGSIMEWAQDFEDPEVHHRHVSHLFGLYPGHTITVEKTPDLCKAVDYTLYKRGEDGPGWSTTWKTALWARLHNSEHAYRMVKHLFDLVDPAREADFEGGLYSNLFTAHPPFQIDANFGFCAAVAEMIVQSTSKDLYLLPALPRDKWANGCVKGLKARGGVTVNVCWKEGELHQIGVWSKDQNSTRRLHYRGSIVTAKMLAGRVYTFDRQLKCVKTYTL* 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6521842 6537917 + Vvi3g651 Vvi3g651 784326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g651 781 Gene3D putative glycoside hydrolase family protein from bacillus halodurans 35 97 - -
Vvi3g651 781 SUPERFAMILY Six-hairpin glycosidases 265 737 IPR008928 GO:0005975
Vvi3g651 781 PANTHER - 160 241 - -
Vvi3g651 781 PANTHER - 1 122 - -
Vvi3g651 781 PANTHER - 267 781 - -
Vvi3g651 781 Pfam Glycosyl hydrolase family 65, N-terminal domain 41 260 IPR027414 -
Vvi3g651 781 PIRSF UCP007663 248 777 IPR016518 GO:0004560
Vvi3g651 781 PIRSF UCP007663 24 247 IPR016518 GO:0004560
Vvi3g651 781 Gene3D - 251 690 IPR012341 GO:0005975
Vvi3g651 781 PANTHER ALPHA-L-FUCOSIDASE 2 1 122 - -
Vvi3g651 781 PANTHER ALPHA-L-FUCOSIDASE 2 160 241 - -
Vvi3g651 781 PANTHER ALPHA-L-FUCOSIDASE 2 267 781 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g651 K15923 AXY8, FUC95A, afcA; alpha-L-fucosidase 2 [EC:3.2.1.51] - vvi:100266190 1435.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g651 Blo02g00947 . Bda06g01219 Bda08g00663 Bpe07g00259 . Bma05g00676 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag1024 . . . . . . . . . Bpe05g00491 . . . Cmo04g00499 Cmo16g00358 . . . . Cpe14g00279 Cpe01g00419 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005477 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 3 1 1 2 1 1 1 1 1 1 1 1 4 1 1 40