Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g655 ATGGCGGAGCAGGATAACTGTGTGCACACCCCCGGAGCATTCAGGAAACGAGCCTCTGATGAGTGCCCGCAATCTACCACAACGAAGAAGCGTGTGGTGTTGGAAGATATCACTAACTCACCCAATAACGAGTTGATTCAGAATTCTGATCGTGAATCCCAGAAGCCCAAACGTGGAATCAGGAGAACTGGCGGTTGTTCTTCTATCATGTATCAACATCTTCATGCCCTGGAGATGGAGGAAAAAAGAAGGGCACGCCCTGATTACATGGAGAAGGTTCAGAATGATGTCACGCCAAATATGCGCGAAATTCTGGTAGATTGGCTGGTAGAGGTTGCAGAAGAATACAAGCTTGTTTCAGACACACTTTTTCTCTGTATATCCTATATCGACAGATTCTTATCATCACATGCTCTCAGGAGGGACAAGCTACAGCTTCTTGGAGTTTCTTGCATGCTTATAGCCTCAAAGTTTGAAGAGATCAGTCCTCCACATGCTGAAGACTTTTGCTACATAACAGATAATCATTACACAGCAGAAGAGGTGGTGAATATGGAGAGAGATGTACTCAAATTTTTGAACTTTGAGAAGGTTGCTCCCACAACAAAAGTTTTTCTCAGGCAAGAACACTCTCAATGTTTTTCCATTATTAAGCATGGCAAGACTGCTATTTGTTTCACATTTGAAGCCTTGAGTTGGTATCTTGCAGAATTAAGCTTGTTGGACTATGGGTGTCTACAGTTCTTACCATCAATGATTGCTGCTTCTTCTATTTTTCTTGCTAGATTCACACTTGAGCCAAACAAGCATCCTTGGAGTTTGGCATTGCAACGCTATTCGGGCTATAAACCATCAGAATTGAAGGAATGTGTGCTTCTCATTCACAGCCGACAATTGAATAGAAGAGGAAACTCCTCTTTGAGAGCAATAAGACAAAAATACCTGCAGCCCATGTTCAAGTGTGTAGCTGCACATGTTTCTCTTCCAGAGATTCCGAAGCATTGCTTTGAGGCCATAAAGGAATAA 1026 42.69 MAEQDNCVHTPGAFRKRASDECPQSTTTKKRVVLEDITNSPNNELIQNSDRESQKPKRGIRRTGGCSSIMYQHLHALEMEEKRRARPDYMEKVQNDVTPNMREILVDWLVEVAEEYKLVSDTLFLCISYIDRFLSSHALRRDKLQLLGVSCMLIASKFEEISPPHAEDFCYITDNHYTAEEVVNMERDVLKFLNFEKVAPTTKVFLRQEHSQCFSIIKHGKTAICFTFEALSWYLAELSLLDYGCLQFLPSMIAASSIFLARFTLEPNKHPWSLALQRYSGYKPSELKECVLLIHSRQLNRRGNSSLRAIRQKYLQPMFKCVAAHVSLPEIPKHCFEAIKE* 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6566135 6569256 - Vvi3g655 Vvi3g655 784330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g655 341 MobiDBLite consensus disorder prediction 25 49 - -
Vvi3g655 341 PANTHER CYCLIN-A3-1-RELATED 54 338 - -
Vvi3g655 341 PIRSF Cyclin_A_B_D_E 66 335 IPR039361 -
Vvi3g655 341 PIRSF Cyclin_A_B_D_E 1 69 IPR039361 -
Vvi3g655 341 SUPERFAMILY Cyclin-like 74 196 IPR036915 -
Vvi3g655 341 Pfam Cyclin, N-terminal domain 77 196 IPR006671 -
Vvi3g655 341 SMART cyclin_7 107 191 IPR013763 -
Vvi3g655 341 SMART cyclin_7 204 296 IPR013763 -
Vvi3g655 341 SMART Cyclin_C_2 200 328 IPR004367 -
Vvi3g655 341 PANTHER CYCLINS 54 338 IPR039361 -
Vvi3g655 341 CDD CYCLIN 101 190 IPR013763 -
Vvi3g655 341 MobiDBLite consensus disorder prediction 1 63 - -
Vvi3g655 341 Pfam Cyclin, C-terminal domain 200 327 IPR004367 -
Vvi3g655 341 CDD CYCLIN 229 295 IPR013763 -
Vvi3g655 341 Gene3D - 85 198 - -
Vvi3g655 341 ProSitePatterns Cyclins signature. 102 133 IPR006671 -
Vvi3g655 341 SUPERFAMILY Cyclin-like 200 329 IPR036915 -
Vvi3g655 341 Gene3D - 77 324 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g655 Vvi18g693 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g655 K06627 - vvi:104878825 642.884