Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g656 ATGGATGCTTCCCCTGCCCAAGAGAGTAATCGGACTAGGAAAAGTTCTAGTCCTAAACAGAATATTTTAGAAGAGGCCAGAAAACTTTCTGAAAGTGTGTGTAGCGAATCGTCAGAGCAGAAACGTCCCTCTGAAAATGGACAGCATGAGCCAGCAGAAATCAGCCCTGTGCTATCCAATTGTATTGTTACTGAACAGTCAGAACTGCCTCCAGAAGATGTGGGTGATACAATATTAGGATTGCCTCCAGCAGATGTGACCAAGAATTCTCTTACTGAACATTTGGGATTGCCTCCAGAAGATGCAATCAAGAATGATGGAACTGAACAATTGGGGTTTTTTCCTGAAGTTGTGACCAAGAGTTCTATTATTGAAAAATTAGGACAATCAGAGCCACCTCCTGAAAATGTGGCCCGGTATTCTGGTCTTGACCAGTCAGGGTCAGCACCCAAAGATTTGGCCAATAAAAGAACTGCAAAACTAGTTAAAAGAAAATATAAATTGAGATCTTCAGTAAGCGGTTCCCGGGTTTTACGCTCAAGGTCACAAGAGAAACCTAAAGCTTCACAGCCAAGTGATAATTTTGTAAATGCCAGTGCTAGCAGAGAAAGGAAAGGAAGAAAGAAGAAAAGGATGAATAAAACAACTGCAGATGAATTTGCGAGAATCAGGAAACATCTTAGATATTTACTGAACAGAATGAGCTATGAGCAAAATCTGATTGATGCTTATTCTGCCGAAGGTTGGAAAGGACAAAGTGTGGAAAAATTAAAGCCAGAGAAGGAACTTCAACGTGCCTCATCTGAAATTTCTCGTCGCAAACTGCAAATACGTGATCTATTTCAACATCTTGATTCATTATGTGCTGAAGGAAGGTTTCCAGAATCTTTATTTGATTCTGAAGGGCAGATTGACAGTGAGGATATATTCTGTGCTAAATGTGAGTCCAAAGACATGTCTGCTGATAATGACATAATACTCTGTGACGGTGCTTGTGATCGTGGATTTCACCAGTTTTGTCTGGAACCGCCATTGTTAAAAGAAGAAATTCCTCCTGATGACGAGGGTTGGCTGTGCCCTGCATGTGATTGCAAAGTTGACTGCATGGACCTGCTTAATGACTCTCAAGGAACAAAACTTTCTGTAATTGATAGCTGGGAGAAGGTTTTTCCTGAGGCAGCTGCAGCTGGGAATAACCAGGATAACAACTCTGGATTTTCATCAGATGATTCTGAGGATAATGATTATGACCCCGATTGTCCAGAGGTTGATGAGAAGGGTCAGGGAGATAAGTCAAGTTCTGATAAATTTGATGAATCTGATGAATTTGACGAATCTGATGAATCTGATTTCACTTCTGCATCTGATGATATGGTGGTCTCACCAAATAATGAGCAGTGTTTGGGGCTTCCTTCTGATGATTCAGAGGATGATGATTTTGATCCTGATGCTCCAGAAATTGATGAACAGGTTAATCAGGGGAGTTCAAGTTCTGATTTTACATCTGACTCCGAGGATTTTACTGCCACTTTAGATCGCAGAAACTTCTCTGACAACGAGGATGGTCTTGATGAGCAAAGAAGATTTGGTAGGAAGAAGAAAGATACTTTAAAGGATGAGCTCTTATCCGTGTTAGAGTCAAATTCTGGTCAAGATAATGCACCTCTGTCTGCAAAGAGACATGTAGAAAGGCTGGATTACAAAAAGCTGCATGATGAGGCATATGGAAATGTTTCTTCTGATTCAAGTGATGATGAAGACTGGACAGAGAATGTTATACCAAGAAAGAGGAAGAATCTTAGTGGTAATGTTGCCTCAGTGTCACCAAATGGAAACACTTCAATCACTGAGAATGGGACAAATACCAAGGACATAAAGCACGACTTGGAAGCAGCTGGATGCACTCCCAAGCGAAGAACTCGTCAGAAGCTGAACTTTGAAAGCACAAATAATTCACTTGCTGAGTCACATAAAGATTCTCGAAGTCCTGGTTCTACTGGTGAAAAAAGTGGGCAATCATCATATAAAAAACTTGGAGAAGCTGTAACTGAGAGACTCTACAAATCCTTCCAGGAAAATCAGTACCCTGATCGTGCTATGAAAGAAAAATTGGCAGAAGAGCTGGGAATAACGAGCCGGCAGGTTAGCAAATGGTTTGAGAATGCCCGTTGGAGCTTTCGCCATCGACCACCCAAGGAAGCCAGTGCGGGTAAAAGTGCTGTGAAAAAGGATGCATCCACGTCTCAAACAGATCAAAAGCCTGAGCAAGAAGTGGTTCTTAGAGAAAGTTCTCACAATGGAGTGGGAAAAAAGGAGTCGCCCAAAGCAGGTGCTTCGAAGGTAGACCGCAGCAAGGAAGCCAATGCAGGTAAAAGTGCTGTGAAAAAGGATGCATCCACGTCTCAAACAGATCAAAAGCCTGAGCAAGAAGTGGTTATTAAAGAAAGTTCTCACAATGGAGTGGGAAAAAAGGAGTCGACCAAAGCAGGTGCTTCGAAGGTAGACCGCTGCAGTGGAGCTAAGAGGAGAAGGAAATTGGCAACTGATGGAAGCCATAGACAGAAATCTTCAACTCCCAACTCTACAAGACAAAAGACAAAGTCAAATCATGAAGCATCTGAGGCAACCAATGGAAGCAGAAGGCAGAATTCTTCTACTCCCAAGTCTAGAAGGCAAAAGACTAAGTTAGCTGGTGAAGCGTCTGAGGCAACTGGTGGAAGCAGTAGACAGAATTCGTCAACCCCAAATTCTAAAAGGCGAAAAACCAAGTCAGATCATGAAGCATCTAATCCGGTCTTAAGCGGTAAGAAGATAGCAAAGACGGCAAAGAGCTCATCTGGCACACCAAAAACAAAGGAAAAGCTAAGTGACAGAATCCAAACAAGAACTAAACTAAAATCTCTTTTTGCTCGCAACGCATCCTATAAATACTAG 2934 42.06 MDASPAQESNRTRKSSSPKQNILEEARKLSESVCSESSEQKRPSENGQHEPAEISPVLSNCIVTEQSELPPEDVGDTILGLPPADVTKNSLTEHLGLPPEDAIKNDGTEQLGFFPEVVTKSSIIEKLGQSEPPPENVARYSGLDQSGSAPKDLANKRTAKLVKRKYKLRSSVSGSRVLRSRSQEKPKASQPSDNFVNASASRERKGRKKKRMNKTTADEFARIRKHLRYLLNRMSYEQNLIDAYSAEGWKGQSVEKLKPEKELQRASSEISRRKLQIRDLFQHLDSLCAEGRFPESLFDSEGQIDSEDIFCAKCESKDMSADNDIILCDGACDRGFHQFCLEPPLLKEEIPPDDEGWLCPACDCKVDCMDLLNDSQGTKLSVIDSWEKVFPEAAAAGNNQDNNSGFSSDDSEDNDYDPDCPEVDEKGQGDKSSSDKFDESDEFDESDESDFTSASDDMVVSPNNEQCLGLPSDDSEDDDFDPDAPEIDEQVNQGSSSSDFTSDSEDFTATLDRRNFSDNEDGLDEQRRFGRKKKDTLKDELLSVLESNSGQDNAPLSAKRHVERLDYKKLHDEAYGNVSSDSSDDEDWTENVIPRKRKNLSGNVASVSPNGNTSITENGTNTKDIKHDLEAAGCTPKRRTRQKLNFESTNNSLAESHKDSRSPGSTGEKSGQSSYKKLGEAVTERLYKSFQENQYPDRAMKEKLAEELGITSRQVSKWFENARWSFRHRPPKEASAGKSAVKKDASTSQTDQKPEQEVVLRESSHNGVGKKESPKAGASKVDRSKEANAGKSAVKKDASTSQTDQKPEQEVVIKESSHNGVGKKESTKAGASKVDRCSGAKRRRKLATDGSHRQKSSTPNSTRQKTKSNHEASEATNGSRRQNSSTPKSRRQKTKLAGEASEATGGSSRQNSSTPNSKRRKTKSDHEASNPVLSGKKIAKTAKSSSGTPKTKEKLSDRIQTRTKLKSLFARNASYKY* 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6571800 6592129 - Vvi3g656 Vvi3g656 784331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g656 977 SUPERFAMILY Homeodomain-like 675 729 IPR009057 -
Vvi3g656 977 PANTHER HOMEOBOX PROTEIN HAT3.1 85 752 - -
Vvi3g656 977 MobiDBLite consensus disorder prediction 645 677 - -
Vvi3g656 977 MobiDBLite consensus disorder prediction 722 739 - -
Vvi3g656 977 CDD PHD_PRHA_like 310 362 IPR045876 -
Vvi3g656 977 Pfam PHD-finger 310 365 IPR019787 -
Vvi3g656 977 MobiDBLite consensus disorder prediction 506 535 - -
Vvi3g656 977 MobiDBLite consensus disorder prediction 471 486 - -
Vvi3g656 977 MobiDBLite consensus disorder prediction 852 891 - -
Vvi3g656 977 MobiDBLite consensus disorder prediction 489 505 - -
Vvi3g656 977 MobiDBLite consensus disorder prediction 395 535 - -
Vvi3g656 977 MobiDBLite consensus disorder prediction 601 620 - -
Vvi3g656 977 MobiDBLite consensus disorder prediction 172 216 - -
Vvi3g656 977 Pfam Homeodomain 682 725 IPR001356 GO:0003677
Vvi3g656 977 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 85 752 - -
Vvi3g656 977 MobiDBLite consensus disorder prediction 1 17 - -
Vvi3g656 977 SMART PHD_3 310 363 IPR001965 -
Vvi3g656 977 MobiDBLite consensus disorder prediction 901 917 - -
Vvi3g656 977 ProSitePatterns Zinc finger PHD-type signature. 311 362 IPR019786 -
Vvi3g656 977 SUPERFAMILY FYVE/PHD zinc finger 300 368 IPR011011 -
Vvi3g656 977 MobiDBLite consensus disorder prediction 18 35 - -
Vvi3g656 977 CDD homeodomain 683 729 IPR001356 GO:0003677
Vvi3g656 977 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 367 IPR013083 -
Vvi3g656 977 MobiDBLite consensus disorder prediction 1 80 - -
Vvi3g656 977 ProSiteProfiles Zinc finger PHD-type profile. 308 365 IPR019787 -
Vvi3g656 977 MobiDBLite consensus disorder prediction 571 677 - -
Vvi3g656 977 ProSiteProfiles 'Homeobox' domain profile. 669 729 IPR001356 GO:0003677
Vvi3g656 977 MobiDBLite consensus disorder prediction 808 845 - -
Vvi3g656 977 SMART HOX_1 671 733 IPR001356 GO:0003677
Vvi3g656 977 Gene3D - 671 740 - -
Vvi3g656 977 MobiDBLite consensus disorder prediction 124 156 - -
Vvi3g656 977 MobiDBLite consensus disorder prediction 755 792 - -
Vvi3g656 977 MobiDBLite consensus disorder prediction 621 644 - -
Vvi3g656 977 MobiDBLite consensus disorder prediction 421 438 - -
Vvi3g656 977 MobiDBLite consensus disorder prediction 453 470 - -
Vvi3g656 977 MobiDBLite consensus disorder prediction 173 199 - -
Vvi3g656 977 MobiDBLite consensus disorder prediction 720 959 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g656 - - - vvi:100254410 1835.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g656 Blo02g00944 Blo03g00085 Bda06g01216 Bda08g00666 Bpe07g00262 . Bma05g00672 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1009 Cone10ag1026 . . . . . . . . . Bpe05g00488 . . . Cmo04g00496 Cmo16g00355 . . . . Cpe14g00278 Cpe01g00416 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003741 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14675 PF00628 PHD 8.90E-11 CL0390 Vvi TF