Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g658 ATGGCGGTTGATCCGATTCTCTCGTCTCCTCTCGGCCCAGCGGCATCCGAGAAGGATGCAAAAGCGCTTCAGTTCATTGAAGAAATGACCCGTAATGCCGATTCAGTTCAGGAGAGGGTGTTGGCTGAAATTTTGAGCCGAAACGGAGAAACTGAGTATCTGAAACGGTTCAAACTGGAAGGGTCAACGGTCCGTGAGACGTTTAAGTCTAAAATCCCGGTGATTAAGTATGAGGATCTGCAGCCTGAAATCCAGCGTATTGCCAATGGAGATCGCTCTGCGATCTTGTCGGCTCACCCCATTTCTGAATTCCTCACCAGCTCTGGGACATCAGCTGGTGAGAGGAAACTCATGCCCACTATTCAAGAAGAGTTGGATCGTCGTCAGATGCTCTACAGCCTTCTCATGCCTGTAATGAACTTATATGTGCCTGGGTTGGACAAAGGAAAGGGTCTCTACTTTCTGTTTGTGAAGTCCGAAACGAGGACCCCTGGTGGGTTACTGGCTCGCCCAGTGCTCACAAGCTACTACAAAAGCGAACACTTCAAGACTCGCCCTTATGACCCCTACAACGTCTACACCAGTCCCAACGAAGCAATCCTCTGCGCTGACTCTTTCCAGAGCATGTACACCCAGATGCTCTGCGGCATCTACGAGCGCAAACAAGTCCTCCGGCTCGGAGCCGTCTTTGCCTCCGGCCTACTCAGAGCCATACGATTCCTCCAACTCAACTGGCACCAACTCACACATGACATCCGAACCGGAACTCTCAGCCCCAAAATCACTGACCCTTCGGTTAGAAATTGTTGCTCCAAGGACAACTGGGAGGGGATTATCACTCGAATTTGGCCTAACACAAAGTACCTCGATGTCATCGTCACCGGTGCAATGGCTCAACTCGTGGACCTGGCCCACGTCGAAGTGGGAAAAGAGTACGAACTCGTCATCACAACCTACGCCGGACTCTACCGCTACCGAGTCGGAGACATCCTCCGAGTCACCGGGTTCCACAACTCAGCCCCGCAGTTCCACTTCGTTCGCCGCAAGAACGTCCTCCTCAGCATCGACTCCGACAAGACCGACGAGGCCGAGTTGCAGAAGGCCGTCGACAACGCGTCGAAGCTCCTTCGAGAAGTCAACACCAGCGTCCTACTGGGTCAGTGCTGTTTAGCGATGGAAGAATCGCTGAACTCAGTGTACCGACAAGGGCGAGTCGCAGACAACTCGATTGGGCCACTAGAGATACGCGTGGTGAAAAGTGGAACGTTCGAAGAACTGATGGATTACGCCATCTCCAGAGGAGCCTCCATTAACCAGTATAAGGTGCCGAGGTGCGTTAACTTTACACCAATCATGGAGCTCCTCGACTCCAGAGTGGTCTCGTCGCACTTTAGCCCTGCTCTACCTCATTGGACTCCGGCACGCCGGCGGTGA 1434 53.07 MAVDPILSSPLGPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPVIKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTHDIRTGTLSPKITDPSVRNCCSKDNWEGIITRIWPNTKYLDVIVTGAMAQLVDLAHVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVLLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSSHFSPALPHWTPARRR* 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6633678 6636058 + Vvi3g658 Vvi3g658 784333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g658 477 Pfam GH3 auxin-responsive promoter 26 301 IPR004993 -
Vvi3g658 477 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.2-RELATED 299 384 - -
Vvi3g658 477 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.2-RELATED 384 477 - -
Vvi3g658 477 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.2-RELATED 6 300 - -
Vvi3g658 477 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 6 300 IPR004993 -
Vvi3g658 477 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 384 477 IPR004993 -
Vvi3g658 477 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 299 384 IPR004993 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g658 K14487 GH3; auxin responsive GH3 gene family - vvi:100250741 587.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g658 Vvi7g978 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g658 Blo02g00943 Blo03g00084 Bda06g01215 Bda08g00668 Bpe07g00263 . Bma05g00671 Bma12g00268 . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1010 Cone10ag1027 . . . . . . . . . Bpe05g00487 . . . Cmo04g00495 Cmo16g00352 . . . . Cpe14g00277 Cpe01g00415 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000806 5 3 4 3 3 3 4 3 4 3 3 3 5 3 3 4 3 4 2 3 3 2 2 3 3 3 2 2 2 2 92