Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g664 ATGCCTTATAAGTACTTTGATGTTGATCTGATCTTCCTTCTAGACGGTCCTGAATTCCAAGTGTTCTTCAAATTGAAGGGTCAAATAGCCATGGCTGTGGATATTCCAACCTTGGAGGAAAGGTATGTTGATTCTTGTAGGCAGCATGGAGCACCACCTAATACTGAAGTTTTATCCGCTCTTCTTAAGGCCAAGGTGAAAAGAAACAATCATGAACCATGTAGCATGGTGGTTTTCTTGGACAGAGTAAAGGATATTGATTTCTATCCTCTTCTTGACTTGTTAATGGAAATCGATGCTTCAGAGATTGATGCAGTTGACATATTTAATGAATCATCATGTGTGTTGAATGGAGAATATGCTTTGTCATTGATGCGTGCAATCAATCAAAAGCTTCGAATTGTTGATCTCCAAGATCTTTCACTTGGGAAGGACTTCTTGCGGGATCTTTCTCAGAGAGGCTTGACTTGCCAAGCATTAAACTTGAGGTCTTCCCATTTCCGGAAGCTCAACTTGATTGGGAAGTTCATGCAGATGCACACTCTTAACTTGGATTTCAGTACTTCCCTCACTAGTTTCCGGGAGGATTGTTTTACTTGCATGCCAAACCTAAGGTGTCTCTCGATGTGTGAAACAAGAGTGTCCAATCTTTGGACAACTATTGCAGCACTCTCTAAACTCCCTTCTTTGGCCGAACTTCGGTTTCAGAATTGTTTATGTTGCTATGACACAGGACCTTGTCCCGTGTCATCTGGTGGGAAGGCAAATGACAGAACTTATTCAGAATTTTTTTTGCATAATAATGTCATTATGAATCCTGAATTCCAAAATACAACCGAGGACTCATCAGATGATAGTGAAGTCGACTTTTCAACTCACCAGCAAGAATTTGGTTTGGTGGAACTTTTGTCTAATGCAGTTGATCTGCAGAGTGAGGTTCCTTTTTGTACATCATGGACTCAAAGTGAAGAAGTGTCCTTGAAAGATGCTTTTAGTTCACAAAGCATCCCTTTTCTTCAAGATATTATGTTGAAGTATGTTTCTCATCATCCATCACCAATATGCTTTGAGAAACACTACAGGGAATACATGATAGCTTCATTACCACATCTGAATGTTTTAGATAACTTACTCATCAAAGAGATTGAAAGGGATTTTGCCAGTGCTATTTTTGCGCAATATTTTGAGTATCTACCTTACAGAAGGAATCGAAAAGAGAATGTTGTTGATATCTTGCAGATGCGTGAAATAAAAGCAATCCATAATCGTATACAAACTCCTAAGAAAAAGCCATCATGTCCTCCTGGAAGGTCTCAATATTTTTATTCCAGGTCACTAGGGGCTGCCAAAGTAGGGTCTTCACCATGGCCATTGTTGCATCCGCTTTCCATTTTAGGCAATGATTCAGGAGGTGAAAGAAGTTTTCGTCCAAGGCAGTTTGAGTACCATCCTTCTAACTCTAGCCTAATGGTCTTTGGAACCCTAGATGGTGATGTTGTTGTTGTCAACCATGAGAGTGAAAAGATTGTTAGTTATATTCCATCACTAGGAGCAATGAATAGTGTACTGGGACTTTGTTGGCTCAAGAAGCATCCATCGAAGCTCATTGCTGGTTCTGATAACGGTTCACTGAAATTGTATGATATCCAGCATATGTCGTCAACAGTTGCAGACATTTACTGCAGTGCTGGTTCTGCCACCTTTGATGAATTTGATCAATTGACATCTGTTCATGTCAACTCAACAGATGAACTCTTTCTTGCAAGTGGGTACTCCAAAAATGTTGCTTTGTATGACATCAATAGTGGAAGACGGTTGCAGATGTTCACTGATATGCATCAAGAGCATATTAATGTTGTTAAGTTTGCAAATCATTCCCCATTCCTTTTTGTTACTTCATCATTTGATCAAGATGTCAAAATGTGGGATTTGAGACAGAAACCAATGCAGCCTTGCTATACTGCTTCAAGTTCAAGAGGAAATGTAATGGCTTGCTTTTCTCCAGATGACCACTATCTTCTTGTGTCAGCTGTTGACAATGAGGTTAAACAACTTTTGTCTGTTGATGGAAGACTCCATTTGAATTTTGAGATAGCTTCAACAGGTAGCTCTCAAAATTACACCCGTTCTTATTACATGAATGGAAGGGACTATATCATCAGTGGCAGTTGTGATGAACAAGTGGTCCGAATTTGCTGTACTCAAACTGGAAGGCGTCTCAGGGATGTTTCTTTGGAGGTAAATGAATCAAATTATTTTCTCTCATTTTTCATCTCCAACTCTATGATAACATGTTTGGACTTCAACATGAGTATCTTAGCAGCATACATGCGTCCAAGCTCAAAATCTGAAATTGTCAAGGTGAATTTGCTAGCATCCAGTGACTATGCCAAGGAGTACTCATGTAACCTGCAATCTCACCCATCCAATAGCATGGGTGGTTGA 2445 39.67 MPYKYFDVDLIFLLDGPEFQVFFKLKGQIAMAVDIPTLEERYVDSCRQHGAPPNTEVLSALLKAKVKRNNHEPCSMVVFLDRVKDIDFYPLLDLLMEIDASEIDAVDIFNESSCVLNGEYALSLMRAINQKLRIVDLQDLSLGKDFLRDLSQRGLTCQALNLRSSHFRKLNLIGKFMQMHTLNLDFSTSLTSFREDCFTCMPNLRCLSMCETRVSNLWTTIAALSKLPSLAELRFQNCLCCYDTGPCPVSSGGKANDRTYSEFFLHNNVIMNPEFQNTTEDSSDDSEVDFSTHQQEFGLVELLSNAVDLQSEVPFCTSWTQSEEVSLKDAFSSQSIPFLQDIMLKYVSHHPSPICFEKHYREYMIASLPHLNVLDNLLIKEIERDFASAIFAQYFEYLPYRRNRKENVVDILQMREIKAIHNRIQTPKKKPSCPPGRSQYFYSRSLGAAKVGSSPWPLLHPLSILGNDSGGERSFRPRQFEYHPSNSSLMVFGTLDGDVVVVNHESEKIVSYIPSLGAMNSVLGLCWLKKHPSKLIAGSDNGSLKLYDIQHMSSTVADIYCSAGSATFDEFDQLTSVHVNSTDELFLASGYSKNVALYDINSGRRLQMFTDMHQEHINVVKFANHSPFLFVTSSFDQDVKMWDLRQKPMQPCYTASSSRGNVMACFSPDDHYLLVSAVDNEVKQLLSVDGRLHLNFEIASTGSSQNYTRSYYMNGRDYIISGSCDEQVVRICCTQTGRRLRDVSLEVNESNYFLSFFISNSMITCLDFNMSILAAYMRPSSKSEIVKVNLLASSDYAKEYSCNLQSHPSNSMGG* 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6718591 6754398 - Vvi3g664 Vvi3g664 784339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g664 814 Gene3D Ribonuclease Inhibitor 125 391 IPR032675 -
Vvi3g664 814 SMART WD40_4 506 548 IPR001680 GO:0005515
Vvi3g664 814 SMART WD40_4 561 599 IPR001680 GO:0005515
Vvi3g664 814 SMART WD40_4 602 643 IPR001680 GO:0005515
Vvi3g664 814 SMART WD40_4 648 686 IPR001680 GO:0005515
Vvi3g664 814 SMART LRRcap_2 357 375 IPR003603 -
Vvi3g664 814 SUPERFAMILY WD40 repeat-like 476 743 IPR036322 GO:0005515
Vvi3g664 814 Gene3D - 472 754 IPR015943 GO:0005515
Vvi3g664 814 SUPERFAMILY L domain-like 129 239 - -
Vvi3g664 814 PANTHER BNAC09G30780D PROTEIN 31 801 IPR046377 GO:0071493|GO:0080008
Vvi3g664 814 ProSiteProfiles Trp-Asp (WD) repeats profile. 610 645 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g664 - - - vvi:100267918 1511.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g664 Vvi7g970 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g664 . . Bda06g01214 . Bpe07g00264 . . Bma12g00269 . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1012 Cone10ag1029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015699 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 10