Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g665 ATGGATCGGAAGCAAGGGTTCTTCGCGGCGTTGAAGGAGGAGGTGGTGAGGGGGCTTTCTCCGGCGAGGTCGCGGGCGAAGAGTCCGGGGAGGGCGGGGTCGCCGATGTCGGGGCTGTTACGGAGGAGGAAGCAGAGCCACAACCAGTACACTTTGACGCCATTGATGGAGGGTCCGGATCCAGACGGCAGCGAAATCGGTGAGTCGAAGCGGAGTGGCTTAGGCTTAGGGCATTGGATGAAGGGACAGCTGTCCAGGACTCCGTCTGTGACTTCTGCGGCGTACAGGAGGTCTGATCTCAGGCTGTTGCTTGGGGTGATGGGCGCTCCTCTCGCCCCGGTGCACGTTAGCACCACTGACCCTTTGCCTCACCTGAGCATCAAGGACACTCCCATTGAAACTTCTTCTGCCCAGTACATATTGCAGCAATACACAGCTGCCTCTGGAGGGCAAAAACTGCAGAACTCAATTCGAAATGCTTATGCCATGGGAAAGGTGAAGATGATAGCTTCTGAGTTTGAGACTGCAACTAGGGTTTTGAAGAACCGGAATGCCTCAAAAGATGCAGATTCAGGTGGGTTTGTGCTCTGGCAGATGAATCCAGACATGTGGTATGTTGAACTTGCAGTTGGGGGTAGCAAGGTTCATGCTGGCTGCAATGGCAAGCTTGTCTGGAGGCACACACCCTGGCTGGGAGCGCATTCTGCAAAGGGCCCTGTTAGGCCGTTGCGTCGAGCTCTTCAGGGCCTTGATCCAAGAACCACCGCTAGTATGTTTGCTGATGCAAGATGCATTGGAGAAAAGAAGATCAATGGATTCCCATCTTACCCGCATCCAATCCAATGGTGGAGATGCTGTTTACTGGGAAACCACAATCAATTCATTCCTGGAAGATTATAG 900 53.78 MDRKQGFFAALKEEVVRGLSPARSRAKSPGRAGSPMSGLLRRRKQSHNQYTLTPLMEGPDPDGSEIGESKRSGLGLGHWMKGQLSRTPSVTSAAYRRSDLRLLLGVMGAPLAPVHVSTTDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKLQNSIRNAYAMGKVKMIASEFETATRVLKNRNASKDADSGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHSAKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGFPSYPHPIQWWRCCLLGNHNQFIPGRL* 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6773154 6775422 + Vvi3g665 Vvi3g665 784340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g665 299 Pfam Protein of unknown function (DUF620) 161 272 IPR006873 -
Vvi3g665 299 MobiDBLite consensus disorder prediction 18 44 - -
Vvi3g665 299 PANTHER LIPASE 36 272 - -
Vvi3g665 299 PANTHER LIPASE 36 272 IPR006873 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g665 - - - vvi:100257657 538.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g665 Vvi18g680 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g665 Blo02g00940 Blo03g00082 Bda06g01212 Bda08g00670 Bpe07g00265 . Bma05g00668 Bma12g00271 . . . . . . . . . . . . . . . . Cla10g01010 Cam10g1033 Cec10g1064 Cco10g1028 Clacu10g1050 Cmu10g1834 Cre10g1206 Cone12ag1059 Cone8ag1093 Cone3ag1013 Cone10ag1030 . . . . . . . . . Bpe05g00485 . . . Cmo04g00494 Cmo16g00351 . . . . Cpe14g00276 Cpe01g00414 Bhi11g01168 Tan01g0658 . . . Mch10g0460 . . . . . . . . Lsi03g01038 . . Cme07g02166
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000467 4 3 4 6 4 3 6 3 3 3 3 3 6 3 3 5 3 8 6 3 3 4 3 3 3 3 3 7 4 2 117