Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g669 ATGGCAGAGAAGCTGAAGCTCTCTCTCCCGGTTCTCCTACCAGGTCCACCTCCCTCAAAACCACTCTTCTCAGACCACCACTTGTCCACAACCCCCTCTCCGCCACCTCCCATTACCCCTCTTCTCCAAAACTTCCAACCGCATACCCAAACCCCAAACCCCCAATCCCCAATAATCCCCAGACGCCGCAGACGTATCGGGAAGTCTCAAGACGCCAACCGTGGAAAGCCATGGTCTCACGGCCGTCTCTCGCCGCCAGACGCCTTGGAGCTCAAAAACCAGATGGTGGAAAAGGGAATTAAACCTGATGTTTTTACTTACACTACTCTTTTGTCAGGATTTGAGAAGGCTGGGAAGGATAAGGCTGCGGTTCAGATTTTTGAGGAGATGAGAAATGAAGGTTGCAAACCCAATATTTGTACATTCAATGCCCTGATTAAGATGCATGGTAACAGGGGAAAGTTTACAGAAATGATGAAAGTTTTTGAAGATATCAAGACATTCCAGTGTTCACCTGATATTGTTACATGGAATACACTTCTTTCTGTGTTTGGGCAGAATGGGATGGACTCTGAAGTTTCAGGAGTGTTTAAGGAAATGAAGAGGGCGGGCTTTGTGCCTGAGAGGGATACTTTCAACACCCTAATCAGCTCCTACAGTCGATGTGGATCATTTGACCAAGCCATGGCTGTTTATAAGAGGATGCTGGAGGCTGGGGTCAATCCTGACCTTTCCAGTTATAATGCTGTTTTAGCAGCATTGGCTCGGGGTGGGCTTTGGAAACAATCTGAGAAAGTACTTGCAGAAATGAAGGATGGTCGATGCAAACCTAATGAGCTGACATATTGTTCTTTGTTACATGCTTATGCCAATGGGAAGGAGATTGAACGAATGTGTGCTCTTGCAGAAGAAATATACTCTGGCATAATTGAACCTCGTGCAGTGCTCTTGAAGACCCTTGTTCTAGTAAATAGCAAGTGTGACCTTCTAATGGAAACAGAACGAGCTTTCTTGGAGTTGAGACAGCGAGGGTTTTCACCTGACATAACTACTCTTAATGCCATGGTTTCCATCTATGGCAGGAGGCAGATGGTTGCAAAAGCAAATGAAATTTTGGATTGCATGAAAAGGGGTGGGTTCACTCCAAGCTTGACAACTTACAACAGCTTGATGTACATGTACAGCCGGTCTGCAAATTTTGAAAGATCAGAAGAAATCCTGAGGGAAATTCTGGCAAAAGGAATAAGGCCTGATATCATTTCATACAATACTGTTATTTATGCCTATTGTAGAAATGGTCGGATGAGAGATGCTTCACGGGTACTCTCAGAAATGAGGGAGTCTGGGCCTGCTCCAGATATAATTACTTATAATACCTTTATTGCAAGTTATGCAGCTGATTCCATGTTTGTGGAGGCTATTGACGTTGTCTGTTACATGATCAAGCATGGCTGTAAACCAAACCAAAGCACATACAATTCCATTGTAGATTGGTACTGCAAGCTTAATCGCAGAGATGAGGCAAGCATGTTTGTCAACAACCTTCGCAAGCTTGATCCACATATTTCCATGGATGAAGAATGTAGGTTATCAGAACGAATGGCAAAGAAATGTTCTTGCAACATATTTTTGACAATCAAGTTGTAA 1647 43.96 MAEKLKLSLPVLLPGPPPSKPLFSDHHLSTTPSPPPPITPLLQNFQPHTQTPNPQSPIIPRRRRRIGKSQDANRGKPWSHGRLSPPDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMFVNNLRKLDPHISMDEECRLSERMAKKCSCNIFLTIKL* 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6804576 6807417 + Vvi3g669 Vvi3g669 784344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g669 548 Gene3D Tetratricopeptide repeat domain 316 449 IPR011990 GO:0005515
Vvi3g669 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Vvi3g669 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Vvi3g669 548 SUPERFAMILY HCP-like 218 521 - -
Vvi3g669 548 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 88 186 - -
Vvi3g669 548 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 344 518 - -
Vvi3g669 548 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 170 359 - -
Vvi3g669 548 TIGRFAM PPR: pentatricopeptide repeat domain 455 488 IPR002885 -
Vvi3g669 548 TIGRFAM PPR: pentatricopeptide repeat domain 420 453 IPR002885 -
Vvi3g669 548 TIGRFAM PPR: pentatricopeptide repeat domain 175 207 IPR002885 -
Vvi3g669 548 TIGRFAM PPR: pentatricopeptide repeat domain 386 419 IPR002885 -
Vvi3g669 548 TIGRFAM PPR: pentatricopeptide repeat domain 105 139 IPR002885 -
Vvi3g669 548 TIGRFAM PPR: pentatricopeptide repeat domain 211 243 IPR002885 -
Vvi3g669 548 TIGRFAM PPR: pentatricopeptide repeat domain 246 279 IPR002885 -
Vvi3g669 548 TIGRFAM PPR: pentatricopeptide repeat domain 140 174 IPR002885 -
Vvi3g669 548 MobiDBLite consensus disorder prediction 1 87 - -
Vvi3g669 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Vvi3g669 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Vvi3g669 548 Pfam Pentatricopeptide repeat domain 161 219 IPR002885 -
Vvi3g669 548 Pfam Pentatricopeptide repeat domain 91 152 IPR002885 -
Vvi3g669 548 Pfam Pentatricopeptide repeat domain 339 394 IPR002885 -
Vvi3g669 548 Pfam Pentatricopeptide repeat domain 406 464 IPR002885 -
Vvi3g669 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Vvi3g669 548 MobiDBLite consensus disorder prediction 43 57 - -
Vvi3g669 548 Gene3D Tetratricopeptide repeat domain 236 307 IPR011990 GO:0005515
Vvi3g669 548 Gene3D Tetratricopeptide repeat domain 85 166 IPR011990 GO:0005515
Vvi3g669 548 Gene3D Tetratricopeptide repeat domain 167 235 IPR011990 GO:0005515
Vvi3g669 548 Gene3D Tetratricopeptide repeat domain 450 519 IPR011990 GO:0005515
Vvi3g669 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Vvi3g669 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
Vvi3g669 548 Pfam PPR repeat family 242 291 IPR002885 -
Vvi3g669 548 Pfam PPR repeat 483 513 IPR002885 -
Vvi3g669 548 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 344 518 - -
Vvi3g669 548 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 88 186 - -
Vvi3g669 548 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 170 359 - -
Vvi3g669 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Vvi3g669 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g669 - - - vvi:100257649 907.516
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g669 . . . . . . . . . Cmo11g01407 . . . . . Cpe04g00316 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma11g01710 . Car11g01132 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009280 1 1 1 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 34