Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g670 ATGAGCTGGTGGTGGTCTGGAGCGATTGGAGCTGCAAAGAGGAAGCTCCAAGAGGATGAGGCACACCCCACCAACTACCAGGGTGTTGGGCTGATTGTAGGTGTCACCGGCATCGTTGGTAACAGCCTTGCTGAGATCCTTCCACTCCGGGACACTCCCGGCGGTCCCTGGAAGGTCTATGGTGTCGCCCGCAGGCCTCAGCCGGCCTGGAACGCCGACAACTGTGTCGAGTACATCCAGTGTGATGTGTTTGACCCGGAAGAAACTTCGTCAAAGCTCTCCAAGCTGACTGATGTCACACACATATTCTATGTGACATGGGCTAATATGGGCAGTGAAGCTGAGAATTGCAGACACATTTGCTTGCAAACTGGAAGAAAACATTATATAGGTCCATTTGAGGCTCTAGGCAAGATTGAACCTCATGATCCTCCGTATCATGAAGAGATGCCCAGATTAGATGTTGAGAATTTTTACCATGTACAAGAAGATATACTGTTTGAGGAGGTGAGGAAGAAGGAGGGCTTGACATGGTCAGTGCACAGGCCTGGCGTCATTTTTGGGTTTTCGCCTTACAGCATGATGAATGCAATTGGGACTCTGTGTGTCTATGCCACAATCTGCAAGCATGAGGGTTTACCATTAAGGTTTCCGGGAACCCAAGACACATGGAATGGATATTGGGATGTTTCCGACGCAGACCTAATTGCTGAGCATCATATATGGGCTGCAGTTGATCCTTTCGCAAAGAATGAGGCATTTAATTGTAGTAATGGGGATGTGTTCAAGTGGAAGCATCTGTGGAAGGTGTTGGCAGAGCAGTTTGGATTGGAGGAGAAAGGCCTGGTCCCAACCAAATTGGAGGAGGTTGGGCAGTGGTGGTTTGCAGATGTTGTTCTGAGTGCTGGGTCATCATTGGATAGTATGAACAAGAGCAAAGAACATGGATTCTTGGGGTTCAGAAACTCAAAATCGTCTTTCCTTTCTTGGATCGATAAAATGAAAGCTTATAAATTTGTTCCTTAA 1026 47.56 MSWWWSGAIGAAKRKLQEDEAHPTNYQGVGLIVGVTGIVGNSLAEILPLRDTPGGPWKVYGVARRPQPAWNADNCVEYIQCDVFDPEETSSKLSKLTDVTHIFYVTWANMGSEAENCRHICLQTGRKHYIGPFEALGKIEPHDPPYHEEMPRLDVENFYHVQEDILFEEVRKKEGLTWSVHRPGVIFGFSPYSMMNAIGTLCVYATICKHEGLPLRFPGTQDTWNGYWDVSDADLIAEHHIWAAVDPFAKNEAFNCSNGDVFKWKHLWKVLAEQFGLEEKGLVPTKLEEVGQWWFADVVLSAGSSLDSMNKSKEHGFLGFRNSKSSFLSWIDKMKAYKFVP* 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6811802 6813183 + Vvi3g670 Vvi3g670 784345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g670 341 CDD 5beta-POR_like_SDR_a 29 294 - -
Vvi3g670 341 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 283 IPR036291 -
Vvi3g670 341 Gene3D - 29 341 - -
Vvi3g670 341 PANTHER 3-OXO-DELTA(4,5)-STEROID 5-BETA-REDUCTASE-LIKE 116 282 - -
Vvi3g670 341 PANTHER 3-OXO-DELTA(4,5)-STEROID 5-BETA-REDUCTASE-LIKE 281 341 - -
Vvi3g670 341 PANTHER 3-OXO-DELTA(4,5)-STEROID 5-BETA-REDUCTASE-LIKE 1 117 - -
Vvi3g670 341 PANTHER 3-OXO-DELTA(4,5)-STEROID 5-BETA-REDUCTASE 116 282 - -
Vvi3g670 341 PANTHER 3-OXO-DELTA(4,5)-STEROID 5-BETA-REDUCTASE 281 341 - -
Vvi3g670 341 PANTHER 3-OXO-DELTA(4,5)-STEROID 5-BETA-REDUCTASE 1 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g670 K22419 VEP1; Delta4-3-oxosteroid 5beta-reductase [EC:1.3.1.3] - vvi:100264565 697.967
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g670 Vvi18g678 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g670 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005993 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 38