Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g672 ATGTTGCGTTCGTGCTTATGCAGACCTCTGGAGAGGTGTTTTGGGAGAAGGGGAGGCGATGGACTCATGTGGAACATGGACCTCAAGCCTCACGCCTCTGGGGACTTCTCCATCGCAGTCGTTCAAGCCAATTCTTCTCTTGAGGATCAGGGTCAAGTGTTCACGTCGCCCTCCGCCACCTACGTCGGTGTCTACGACGGCCATGGCGGCCCTGAAGCTTCTCGATTTGTTAATAAACATCTCTTCCCTTATCTCAACAAATTTGCCTTGGAGCAGGGAGGGTTGTCGGCGGATGTGATAAAGAAGGCGTTTAATGCGACGGAGGAGGAGTTTCTACATGTGGTAAAGAGGTCGTTGCCGGCTCGGCCGCAGATTGCATCGGTGGGGTCCTGTTGTTTAGTTGGTGCGATTTCGAATGGTGTACTGTATGTAGCGAATCTAGGGGACTCGAGGGCGGTTCTTGGGCGGAGAGCTTCGGAGGGGAGGAAGAATCCGGTGGTGGCAGAGCGTTTGTCGACGGATCATAATGTTAGTGTTGAGGAAGTAAGGAGGGAGGTTGAGGCGCTTCACCCGGATGATTCGCATGTTGTGGTTTATACGCGTGGTGTTTGGAGAATTAAGGGCATTATACAGGTTTCAAGGTCTATTGGTGATGTTTATTTGAAGAAACCCGAGTTTAACAGGGACCCGATTTTCCAGCAATTTGGAAATCCTGTCCCTTTGAAACGTCCTGTAATGACAGCAGAACCCTCAATCCTAATTAGAAAGCTTCTGCCACAAGACTCATTCCTAATATTTGCGTCAGACGGTCTATGGGAACAACTGAGTGATGAAGCAGCAGTAGAGATTGTCTTCAAAAACCCAAGAGCTGGAATAGCTAAGAGATTGGTGAGAGCTGCACTTCATGAGGCTGCAAAGAAGAGGGAGATGAGTTACCAGGACATTAAGAGAATAGAAAAAGGAATAAGGCGCCATTTCCATGATGACATCACTGTGATCGTGATCTATCTGGATCACCACAAGGGCTCCACTAACAGACGACCTAAGCACAGTACTGTTAACGGCACCACCAACGCACCTACTGACATCTTCTCGCTTAAAGCCCATGAAGGGGATGAGGATCTGCTGCATACCTTTTCATGA 1143 49.08 MLRSCLCRPLERCFGRRGGDGLMWNMDLKPHASGDFSIAVVQANSSLEDQGQVFTSPSATYVGVYDGHGGPEASRFVNKHLFPYLNKFALEQGGLSADVIKKAFNATEEEFLHVVKRSLPARPQIASVGSCCLVGAISNGVLYVANLGDSRAVLGRRASEGRKNPVVAERLSTDHNVSVEEVRREVEALHPDDSHVVVYTRGVWRIKGIIQVSRSIGDVYLKKPEFNRDPIFQQFGNPVPLKRPVMTAEPSILIRKLLPQDSFLIFASDGLWEQLSDEAAVEIVFKNPRAGIAKRLVRAALHEAAKKREMSYQDIKRIEKGIRRHFHDDITVIVIYLDHHKGSTNRRPKHSTVNGTTNAPTDIFSLKAHEGDEDLLHTFS* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6846057 6849868 - Vvi3g672 Vvi3g672 784347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g672 380 CDD PP2Cc 42 337 IPR001932 -
Vvi3g672 380 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Vvi3g672 380 ProSiteProfiles PPM-type phosphatase domain profile. 35 337 IPR001932 -
Vvi3g672 380 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 5 374 - -
Vvi3g672 380 PANTHER ALPHABET, ISOFORM E-RELATED 5 374 - -
Vvi3g672 380 Pfam Protein phosphatase 2C 57 306 IPR001932 -
Vvi3g672 380 SUPERFAMILY PP2C-like 42 339 IPR036457 -
Vvi3g672 380 SMART PP2C_4 29 335 IPR001932 -
Vvi3g672 380 Gene3D - 26 347 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g672 Vvi18g675 ECH
Vvi3g672 Vvi7g966 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g672 - K01102 vvi:100254953 759.599