Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g673 ATGACGAGCGCATCGGAGCTTTTCTCCAGAAGGTCTCGTCTGGGCCGAGCCGCGCCACCCGCTGATTTCGAGGGGCTTGAATTGCCTGATGACCGGAGCTTTCATTACATCTCCAATCGTCGCCGTCACCACCATCGCCATGATCCCGATGGCTGCGACCCTCTCCGGCGGGCTCAGCATTTCAGGCACATCTCCCATCGCGTGTACCGTCCGGATCGTGAACCGGTTCGGCTGGACCAAGCTACCCGTCAGCCCAGTTCTAGCGGCATCAACAGTGTCAGTGCCGATATTTTAAGTGGTATAAGCCACAGGCAGAGATTCACTGGGAGTGACAGGCTTCCTGGAGCTGTGTTGCTTGCAAGGGAAAGACTTCTTGCAAGGTTGAGAGGTGTCCCACTTTCTGGAAACAGGCGAATCAGCAGACCTTCATTAGACTTCCACCTTGATGATTTCACATTTGGTGATGACTTCAGGCTCATAGACGTAGGGGACTGGAGCACTGGGTGGTTGACAGGAGGCACTCCCTCTTCTGATTTGAACTCTGAAACAATGCTGCCACCTTTAATGCGAGAACCAAGCAAAAAGAAGCCACCTGGACTCACTCAGGAAGCCCTGGACTCCTTGCACCGAGCGGTGTTCAGCAGAGCAGAAGGTGCAGAAGAAGGGATGCCAAGAGCGTCAAGGGACTGTTCTATATGCCTGGATGGTTACAGGGAAGGAGACAAACTGACATGCTTACCTTGTGGGCATAAGTTCCATTCTGCCTGCCTGGATCCCTGGGTTCGTACTTGTGGGGACTGTCCATACTGTCGCAGTGTTATAGATATAAGCTCGTAA 837 53.29 MTSASELFSRRSRLGRAAPPADFEGLELPDDRSFHYISNRRRHHHRHDPDGCDPLRRAQHFRHISHRVYRPDREPVRLDQATRQPSSSGINSVSADILSGISHRQRFTGSDRLPGAVLLARERLLARLRGVPLSGNRRISRPSLDFHLDDFTFGDDFRLIDVGDWSTGWLTGGTPSSDLNSETMLPPLMREPSKKKPPGLTQEALDSLHRAVFSRAEGAEEGMPRASRDCSICLDGYREGDKLTCLPCGHKFHSACLDPWVRTCGDCPYCRSVIDISS* 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6851537 6855077 - Vvi3g673 Vvi3g673 784348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g673 278 PANTHER SI:CH211-59O9.10 1 276 - -
Vvi3g673 278 ProSiteProfiles Zinc finger RING-type profile. 230 271 IPR001841 -
Vvi3g673 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 275 IPR013083 -
Vvi3g673 278 SMART ring_2 230 270 IPR001841 -
Vvi3g673 278 CDD RING-H2_PA-TM-RING 229 271 - -
Vvi3g673 278 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 276 - -
Vvi3g673 278 Pfam Ring finger domain 229 271 IPR001841 -
Vvi3g673 278 SUPERFAMILY RING/U-box 229 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g673 - - - vvi:100249808 566.614
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g673 . . . . . . . . . Cmo11g01410 . . . . . Cpe04g00318 . . . . . . . . Cla02g00669 Cam02g0703 Cec02g0717 Cco02g0738 Clacu02g0711 Cmu02g0706 Cre02g1021 Cone12ag1054 . Cone3ag1017 Cone10ag1034 Lsi03g00564 Csa07g00697 . Cme01g00109 . . . . . . . . . . . Cma11g01708 . . . . . . . . . . . . . . . . . . . . . Chy01g00119 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012540 0 0 0 0 0 1 0 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 1 1 27