Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g678 ATGCAAGCCAAGATCAGCTCCTTCTTCAGGCCCTCTTCTGCACCTAAATCACCTCCAATTTTCGATGATGACGATGATGAGGACGATGAAACAACACCGTTTTCTGCCACGGAGGAACCTCCCATTTTCGGTGACGACAACGAAACGGCGTCGTTTTGGGAGAAGGAACCAAAGGTCGTCATCACGTACAAGCGGAGAGCTCCGAACCCAGATTGGGAAAAAAGCGAGACGGATGGTGGTTTGATTGCTGAAACTATGAAGAAACCCATTGTAGTGGATTCATCACTCCCAAGCAGAACCCTCGATAAGAAGAGAAGCTATGCTCAGTTCCATTTAGAGTTAGGCCAGTCTGATTTCCTTCTGCATTCATGCTCTACATGTGGGCTTAAGTATTCTCCTGGTGATGAAGGGGATGAGCAAGTTCACAAGGCATTCCACAAGAATTACAACCATGGAATTCAATTCAAGGGTTGGCGCAATGAGAGAATCATTAGTATGCCTTCAGCTGGAGGGGGACGAATCATTTTGGTGTTGGATGGCGACCCTCCTGCTCAGAAGAACAAGGTCCATGAGGTTGTAAAGATGATGGAGATTGAACTTGGAGGTGCATGGATTTTTCATAAGAACCGTAAGGTGTATCTATTCATTTCCTCCCAAAGGGTTGCTGGCTGTCTTGTTGCAGAACCAATAAAGAAAGCCTACAAAATTCTCTCGTCCTCAGCAGATGAAAGATCTAATGATACTAGTTCAAAGGAAACAAGACCGAATTCAAACACACTTCAGTTTGGGACTGTAAGTTTTCAGAGGGAAGTCATCAAAAGAGCCCCTTCTGTTAATAGCTGTGAAGTATTGGATGGAAGACCCAATGGACCTGTTGTTTGTGAAAATGAAGCTGTACCTGCTATCTGTGGAATTAGAGCCATATGGGTTACTCCCTCCAACAGAAGAAAACATATTGCCAGCCAACTTCTGGATGCTGTGAGGAAAAGTTTCTGCATGGGGTTTGTCCTCAAGAGCTCTCAGCTGGCATTCTCTCAACCAACATCAGCAGGAATGGCGTTGGCTTCCAATTATTTTGGTTCAGGATCTTTCTTGGTGTACAAGACTAATAAATCATAA 1119 44.59 MQAKISSFFRPSSAPKSPPIFDDDDDEDDETTPFSATEEPPIFGDDNETASFWEKEPKVVITYKRRAPNPDWEKSETDGGLIAETMKKPIVVDSSLPSRTLDKKRSYAQFHLELGQSDFLLHSCSTCGLKYSPGDEGDEQVHKAFHKNYNHGIQFKGWRNERIISMPSAGGGRIILVLDGDPPAQKNKVHEVVKMMEIELGGAWIFHKNRKVYLFISSQRVAGCLVAEPIKKAYKILSSSADERSNDTSSKETRPNSNTLQFGTVSFQREVIKRAPSVNSCEVLDGRPNGPVVCENEAVPAICGIRAIWVTPSNRRKHIASQLLDAVRKSFCMGFVLKSSQLAFSQPTSAGMALASNYFGSGSFLVYKTNKS* 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6917798 6921320 - Vvi3g678 Vvi3g678 784353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g678 372 Pfam zinc-finger of acetyl-transferase ESCO 109 148 IPR028005 -
Vvi3g678 372 MobiDBLite consensus disorder prediction 1 49 - -
Vvi3g678 372 Pfam ESCO1/2 acetyl-transferase 299 367 IPR028009 -
Vvi3g678 372 PANTHER N-ACETYLTRANSFERASE ECO 1 369 IPR033257 GO:0000070|GO:0007062|GO:0016407|GO:0045132
Vvi3g678 372 PANTHER N-ACETYLTRANSFERASE ECO 1 369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g678 K11268 ESCO, ECO1; N-acetyltransferase [EC:2.3.1.-] - vvi:100249805 749.584
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g678 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .