Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g68 ATGCATACCAATGGGGTTCCTTTAGATACATATAGTTTTTGTTGTTCTTTAGTGGCTTCATGTTCCATGAAAAACGTTAAATTTGGTGCACAGATACATGCCCGTGTTGAAAAATCAGGTTGGTTGTCAAGTGTTTTTGTGGGTAGTGCTCTGGTTGATATGTATGCTAAATTGTCGCTTATCAATGACGCAGCAATGGTGTTCGATGAAATTCCTGTCAAGAACACTGTTTGTGCAAATGCACTATTATCAGGTTATGGTGAGGCTAAGCTGTGGGTTGAAGGGCTTGACTTCGTTCGAAAGATGCGTTCATTGAATTTGAATTGTGATCATTTCACATTGTCAGCAATGTTACGCTCATGTGCTGGTCTGTCCGCAATTGAATTGGGTAGGCAGGTTCATGGGAGTGTGATCCGTAAGGTTTCTGATGTGGAAGCTGATGTCTTTTTGCAGAGTTCTTTGATTGAAATGTATGGTAAGTGTGGCTCAGTGGAGAAGGCTTGGCAAGTCTTCAATTTGGCAGGCTTTGGATACAAGGGGGAGAGAAAGAGAGATGTTGTTCTGTGGACCTCAATGCTTGCTGTATGTGGTAGAAATGGGCATTTTGAAAAAGTAATTGAGTTGTACAAAGAGATGTTGAGGGAAGGGATAAGGCCAGATGGGGTGGCATTTGTGACTGTCATCTCTGCTTGTGGACACACTGGCCATGTGAAACTTGGAATTAAGTATTTTGAGTCCATGGTCAGTGACTTTGGATTGGAACCTGGCCCAGAGCATTACAGTTGTGTAGTTGATTTGCTTTGCAGGGCTGGTGAGTTGGAGAAGGCATGGAAGATGGTGAATGAGATGACACTTAAAGAGAATGGCAGTTACAGTATCTCAATGTGGGGGGCTTTGCTTAATGCTTGCAACGAATTTGGAAATGTTGAATTGGGTAAATTGGCTGCTCACAAGGCACTTGAGATGGATCCTCATAATGTCGGGATCTATGTTCTGTTATCAAATATGTATGCTAAATTCAGTATGTGGGATGAGATTGGGCAGCTGAGGGAGTTGATGAAGGAAAGTGGTTTAAAGAAAGATGTTGGACGCAGTTGGATAGAGATTACAAGTTGA 1116 42.29 MHTNGVPLDTYSFCCSLVASCSMKNVKFGAQIHARVEKSGWLSSVFVGSALVDMYAKLSLINDAAMVFDEIPVKNTVCANALLSGYGEAKLWVEGLDFVRKMRSLNLNCDHFTLSAMLRSCAGLSAIELGRQVHGSVIRKVSDVEADVFLQSSLIEMYGKCGSVEKAWQVFNLAGFGYKGERKRDVVLWTSMLAVCGRNGHFEKVIELYKEMLREGIRPDGVAFVTVISACGHTGHVKLGIKYFESMVSDFGLEPGPEHYSCVVDLLCRAGELEKAWKMVNEMTLKENGSYSISMWGALLNACNEFGNVELGKLAAHKALEMDPHNVGIYVLLSNMYAKFSMWDEIGQLRELMKESGLKKDVGRSWIEITS* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 856871 857987 - Vvi3g68 Vvi3g68 783743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g68 371 Gene3D Tetratricopeptide repeat domain 145 325 IPR011990 GO:0005515
Vvi3g68 371 Gene3D Tetratricopeptide repeat domain 1 144 IPR011990 GO:0005515
Vvi3g68 371 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Vvi3g68 371 SUPERFAMILY TPR-like 157 345 IPR011990 GO:0005515
Vvi3g68 371 Pfam PPR repeat 152 172 IPR002885 -
Vvi3g68 371 Pfam PPR repeat 78 106 IPR002885 -
Vvi3g68 371 Pfam PPR repeat family 184 231 IPR002885 -
Vvi3g68 371 Pfam E motif 307 368 IPR046848 -
Vvi3g68 371 Pfam PPR repeat 252 284 IPR002885 -
Vvi3g68 371 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 366 - -
Vvi3g68 371 TIGRFAM PPR: pentatricopeptide repeat domain 260 283 IPR002885 -
Vvi3g68 371 TIGRFAM PPR: pentatricopeptide repeat domain 152 173 IPR002885 -
Vvi3g68 371 TIGRFAM PPR: pentatricopeptide repeat domain 223 255 IPR002885 -
Vvi3g68 371 TIGRFAM PPR: pentatricopeptide repeat domain 78 110 IPR002885 -
Vvi3g68 371 TIGRFAM PPR: pentatricopeptide repeat domain 187 220 IPR002885 -
Vvi3g68 371 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 286 IPR002885 -
Vvi3g68 371 PANTHER OS02G0126500 PROTEIN 1 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g68 - - - vri:117910296 748.429
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g68 . . . . . . . . . . . Cma20g00798 . Car20g00683 . . . . . . . . . . . . . . . . . . . . . Lsi10g00430 . Chy11g00322 . . . . . . . . . . . Cmo20g00806 . . . . Cpe16g00285 . Bhi10g01925 . . . . . . . . . . . . . . Csa02g01323 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009137 1 6 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 0 1 0 1 1 1 1 1 1 1 2 1 1 31